RNA id: XR_004578105.1


Basic Information

Item Value
RNA id XR_004578105.1
length 1444
RNA type misc_RNA
GC content 0.41
exon number 3
gene id LOC113539989
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21354619 ~ 21371010 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGTGTGACCTGAGAGAAGATGGCGGAAAACGCTTCATgttaaaTTTATGGACAGCAAGCTAAAGACCTGTGTGTAACCTGGTACATCGTCTGGCTGGCATAGCGGGAGGTTGTAGGGCAGCACAGGGAATTCCAGTGGAAGATCGGTCAGGACCTGGAGCAGCGGGGAGCCGGAGCAGCACAATCCTCTGCTTCCTCCCAAAAGCactctggcaaaaaaaaaaccctggaatTATCTCAATGTGTCAAACTGAGTTTCAGTTTCCAACAGTGCTTTTTGTAGGGGGTCATCCACTTGAAGGGTCATCAGGAGTGCAGGTGAAAGGGACAGACAGAATGAGGTTGGCACTGGCAGGTAGGGCGGGATAATGCCATTTGCtgttgtgtgcttgtgtgtatacacacacacacacacacacacacacaagtcataCAAGTTTCACATATCAAACATATCCCTTATTTCATCCTAAATGTGTCACAAATAGTTTCCCACTGAAAAAGGGCTCAGGGATCTGGAGCCGGCGCCGAGACTGCAGCGGAGTGTTAaatatagatacacacacattccatcCACACATCTAAATACTGCAGCGCTTAGATCTAAAAGAGACCTCAgtttgcctttgtgtgtgtgtgtgtgtgtatacgaaTAGTATAATACAGCAGAATTTCATGCTGATTAAGCAATGAATAGGCACAATTCTGATATTTCTGTCACGAGACACCATTCTGCCACAGACTCTCTTATCAGTAGCAGGAAAAGGCTTTCTTCTGGTGAATGTTTGACATTCCTCCTCTCAGTTTTGTTTTGGGAATAGGACACATTCAACAGGAGACCACACCGGCATTCCACACTTCTTCAGTTCCTTCACATCTAACACTCATccctgtgtatacacacactgtggaaaAAGGGTATATTGCCAGTGATAAATTATCTTTTCTTGAACCTGTTCCAACTTCATACTGTATGCTCAATAATCTGTATGTATGCCTGCGTGCATGTCTCTATGGGTTGTATGTAATGtttagtcagtgtgtgtactgattccatttttttaaaaatagagttAAAATAGATCTTGACTCCTTGATTGTTTTGTGATGTCAGAAAGAGCTCTTACtccttaaattaatttaaagtgCTTCATTGCCATGACAAGCTTGGGCACATTTGTATCACCAATGTTGGAAGAATGTATCTTAAACCTGCGAAATGTTTAAATTGCTCTGCCTTAATTTGTGAATTTAATTATTCAGCCTTCAttttttctctatctgtctcttttcagtttctttaatGATTGACAAAGTAAATTAATGTACACCTTGTGCAATATCAAATATTCTGATCAGTATGGTTATCAATCTTATTtgccatctctctcactcttgtagacacacacacagagtgctggGGTTATCCTTTTAAAGCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81220 lncRNA downstream 39000 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA downstream 39000 21326076 ~ 21329250 (-) False G68462
TU81229 lncRNA downstream 47104 21320818 ~ 21321146 (-) True G68466
TU81181 lncRNA downstream 54377 21304764 ~ 21313873 (-) False chchd7
TU80840 lncRNA downstream 564146 20803417 ~ 20804104 (-) True G68186
TU81263 lncRNA upstream 36107 21407111 ~ 21408207 (-) True G68495
TU81290 lncRNA upstream 100628 21471632 ~ 21471839 (-) True G68519
TU81291 lncRNA upstream 101815 21472819 ~ 21473032 (-) True G68520
TU81365 lncRNA upstream 103583 21474587 ~ 21475776 (-) True G68577
TU81377 lncRNA upstream 125928 21496932 ~ 21501433 (-) True G68585
XM_026936370.2 mRNA downstream 17439 21337108 ~ 21350811 (-) True LOC113540120
XM_026936598.2 mRNA downstream 54353 21304692 ~ 21313897 (-) True chchd7
XM_026936917.2 mRNA downstream 119613 21235253 ~ 21248637 (-) False LOC113540421
XM_026936918.2 mRNA downstream 124745 21235253 ~ 21243505 (-) True LOC113540421
XM_026936000.2 mRNA downstream 134565 21227985 ~ 21233685 (-) True sdcbp
XM_026936104.2 mRNA upstream 5391 21376395 ~ 21379959 (-) True sox17
XM_026937164.2 mRNA upstream 28551 21399555 ~ 21401268 (-) True sox32
XM_026936006.2 mRNA upstream 42857 21413861 ~ 21417828 (-) True mrpl15
XM_026936203.2 mRNA upstream 56181 21427185 ~ 21430580 (-) True LOC113540027
XM_026935849.2 mRNA upstream 109611 21480615 ~ 21485813 (-) True fastkd3
TU81225 other downstream 39000 21326046 ~ 21329250 (-) False G68462
XR_003404107.1 other downstream 1224361 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 1402412 19962616 ~ 19965838 (-) False snrpf
XR_004578056.1 other downstream 1424883 19931590 ~ 19943367 (-) False LOC113539792
trnaa-ugc other upstream 47164 21418168 ~ 21418239 (-) True trnaa-ugc
TU81579 other upstream 563522 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 1261181 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1922947 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 2108961 23479965 ~ 23483850 (-) True LOC117597073

Expression Profile