RNA id: XR_003404072.2


Basic Information

Item Value
RNA id XR_003404072.2
length 190
RNA type ncRNA
GC content 0.49
exon number 1
gene id LOC113540698
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29523723 ~ 29523912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccTTCTTTACCAAAAGCGCCATGCCAAAATCAGCAGGTCTGAGCTTTTACCGGTTTAGTCCTGCTGGTCATGCTAGTATGGTACATCTCAAAGAAGGGAGAGCAAAAGCCGCAGCCTCGGAAATGAGACCAGGAGGGACCTCTTTCTTAATGTCCCGTGTCCTGTGTCTCAAGATTCTGCGCTACATGT

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86901 lncRNA downstream 203389 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 305565 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 308672 29213553 ~ 29215051 (-) True G73318
TU86820 lncRNA downstream 334383 29188158 ~ 29189340 (-) True G73249
TU87006 lncRNA upstream 16183 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 83689 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 147275 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 187174 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 188981 29712893 ~ 29713446 (-) True G73458
XM_034303512.1 mRNA downstream 57703 29461041 ~ 29466020 (-) True kcnmb2
XM_026937229.2 mRNA downstream 58925 29461041 ~ 29464798 (-) False kcnmb2
XM_034303513.1 mRNA downstream 59012 29461041 ~ 29464711 (-) False kcnmb2
XM_026937224.2 mRNA downstream 70930 29442115 ~ 29452793 (-) True mfsd8l2
XM_034303445.1 mRNA downstream 152197 29359500 ~ 29371526 (-) True pcolce2a
XM_026937263.2 mRNA upstream 40309 29564221 ~ 29575414 (-) True LOC113540665
XM_026937014.2 mRNA upstream 52786 29576698 ~ 29592827 (-) True ripk2
XM_026935978.2 mRNA upstream 106058 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA upstream 106058 29629970 ~ 29666855 (-) True LOC113539879
XM_026936973.2 mRNA upstream 157332 29681244 ~ 29692555 (-) True si:ch211-13f8.2
XR_003404076.1 other downstream 257 29523394 ~ 29523466 (-) True LOC113540702
TU86878 other downstream 371342 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 638758 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 638758 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 641559 28873578 ~ 28882164 (-) True LOC117597037
XR_003404071.2 other upstream 597 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 1077 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 40690 29564602 ~ 29575727 (-) False LOC113540665
XR_003403975.2 other upstream 200676 29724588 ~ 29730857 (-) True zgc:110366
TU87233 other upstream 495594 30019506 ~ 30022525 (-) True G73619

Expression Profile