Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404098.1 |
| length | 190 |
| RNA type | ncRNA |
| GC content | 0.49 |
| exon number | 1 |
| gene id | LOC113540725 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 13204273 ~ 13204462 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU75556 | lncRNA | downstream | 4364 | 13199019 ~ 13199909 (-) | True | G63787 |
| TU75558 | lncRNA | downstream | 8392 | 13194062 ~ 13195881 (-) | True | G63789 |
| TU75587 | lncRNA | downstream | 87333 | 13116073 ~ 13116940 (-) | True | G63817 |
| XR_004578117.1 | lncRNA | downstream | 253178 | 12941670 ~ 12951095 (-) | True | LOC117597210 |
| TU75331 | lncRNA | downstream | 331931 | 12799166 ~ 12872342 (-) | True | G63580 |
| TU75618 | lncRNA | upstream | 3991 | 13208453 ~ 13214236 (-) | True | LOC113540062 |
| XR_003403993.2 | lncRNA | upstream | 4965 | 13209427 ~ 13214085 (-) | False | LOC113540062 |
| TU75563 | lncRNA | upstream | 28271 | 13232733 ~ 13234948 (-) | True | G63793 |
| XR_003404051.2 | lncRNA | upstream | 47515 | 13251977 ~ 13259293 (-) | False | LOC113540618 |
| TU75628 | lncRNA | upstream | 47521 | 13251983 ~ 13259368 (-) | True | LOC113540618 |
| XM_026936940.2 | mRNA | downstream | 467755 | 12734646 ~ 12736518 (-) | True | pop7 |
| XM_034303407.1 | mRNA | downstream | 467890 | 12734646 ~ 12736383 (-) | False | pop7 |
| XM_026937075.2 | mRNA | downstream | 491429 | 12710191 ~ 12712844 (-) | True | ufsp1 |
| XM_034303764.1 | mRNA | downstream | 497229 | 12697759 ~ 12707044 (-) | True | LOC113540289 |
| XM_034303765.1 | mRNA | downstream | 512435 | 12680361 ~ 12691838 (-) | True | LOC117597087 |
| XM_026936247.2 | mRNA | upstream | 12438 | 13216900 ~ 13223130 (-) | True | bcl6b |
| XM_034303958.1 | mRNA | upstream | 38207 | 13242669 ~ 13243766 (-) | True | sst5 |
| XM_026936178.2 | mRNA | upstream | 59809 | 13264271 ~ 13267825 (-) | True | tm4sf5 |
| XM_034303429.1 | mRNA | upstream | 81800 | 13286262 ~ 13308475 (-) | True | acap1 |
| XM_034303430.1 | mRNA | upstream | 85514 | 13289976 ~ 13308478 (-) | False | acap1 |
| TU74901 | other | downstream | 926604 | 12272372 ~ 12277669 (-) | False | LOC113539775 |
| TU74900 | other | downstream | 926661 | 12272218 ~ 12277612 (-) | True | LOC113539775 |
| TU74899 | other | downstream | 926661 | 12272372 ~ 12277612 (-) | False | LOC113539775 |
| TU74889 | other | downstream | 955217 | 12247274 ~ 12249056 (-) | False | si:dkey-165a24.9 |
| TU74378 | other | downstream | 1669260 | 11533764 ~ 11535013 (-) | False | LOC117597110 |
| XR_003404087.1 | other | upstream | 699369 | 13903831 ~ 13904021 (-) | True | LOC113540713 |
| XR_003404068.1 | other | upstream | 703375 | 13907837 ~ 13908000 (-) | True | LOC113540694 |
| XR_004578131.1 | other | upstream | 704705 | 13909167 ~ 13909357 (-) | True | LOC113540747 |
| TU76338 | other | upstream | 1028347 | 14232809 ~ 14243681 (-) | True | G64436 |
| trnae-cuc_13 | other | upstream | 1530194 | 14734656 ~ 14734727 (-) | True | trnae-cuc_13 |
