RNA id: XR_004577992.1


Basic Information

Item Value
RNA id XR_004577992.1
length 1995
lncRNA type intronic
GC content 0.41
exon number 4
gene id LOC117597048
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17453446 ~ 17484922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCCCAGGAGCCAACAAACAATGACATGTTCTTTGAAAACCCTAGAAATGTGATTGAAAGTGAAACAGTTGTAGTTTGCAGAGTACACTGTGTAAATGATATGATTCAGGCTTTctcagacaaaaacatactaCATGCCAATGTAACATTTAAACGTCTACTCGAAAATGGTGAGGAGGAAGCTGGCATCGGAGATGGAGTGTTCCAAGACTGTCTTACTGATTTCTGGGACACATTTTTTGCAACAAGAACTTGTGGAACAACTTACAAGAAACCTAATCTGCATGACACTTACCAAGAAAGAGAGTGGGAATCTGTTGCACATATTTTTGCTTTTGGATGGCGGCGCTTTCGTTACTTGCCAATTCAGCCTGCACCTCCTTTTCTTAAAGAAGCACTGTCATTTCCTTCACCAGAAACCAGTCTAATGGAGGTGGTTTTGAATTACATTAGCCCAACAGAGAAGGATGTTTTAAGTGAAGCACTCCAAGACTTCCAAAGTGCTGACATGGATGAATTCCTCAGTGTAGTCACAGCTGCTCAGTGCTTCCAAATGAAAACAATCTCCAGAACATAGTGGAAGAAATTGCACATAAAGAGATGGTGcaataatatttaaagataaaGTGCTGGCAACCTATTCTGTGATCTATTGGGGAAACCATGACTGCAGAAAGTCTGGACAAGATAGCTGAAAATCTCCAACCAAAGGTAAGAAGTGTCACAAAATCCAATAAGTTGCATAATAATCCCACAGTCAATGTCCCTGTCTGAAACAATTGTATCAAATCATCTCCTGCGATTCATTAGGGAAAGAGACCATAAGGAGCTTGGTCTTTTTCTCATATACTGCACAGGGTCTTATTTCTCTCCAAGACAGTTCAagtaacatttaaagaaatgaataagTTTTCAAGAACGCCCATTGCACACACTTGTACGCAACATTTGGAGCAACATTGTACACATCACATTGGCATGTGACTTCAGAACCTATGCAGAATTTAGGGCAGAGGTTTCCTCTGTGTTAAACAGTGGAGTGTGGCTAATGGTTATGTCACAGATGTATGAAGTGCCTGCACCAAACGAAAAAGATGTCTGGCTGCCTAATGAACTAAAGAATAAACAGGAGCTGATCACACTTTTGAGTGTGGTAATCTTCACCAGCACTGCACAACAGGCAGCAACCAACAACGGACAGTTTGACTTTTGTTCGTGGATGCCCAACACACCTTGCACCATGTGCCATCCTCCACCCATAGACAAGGACGGTGTCACTATGGATTTGGAGTCATGAACACACTCCCGGATGTCAGACAGTCATGGAAATGGCTATCACATGGCTTTTAGGAAGAACTCAGCCAGACGGAATACCTCTGGCACAGTACGAGGAACAGAACTTCACTGAGCCGGCAGCCCAAAAGATGATTGATAACTTCAGGCAGGATCTGAAAGACATCGAACCACCGCATCTCTATCTGTGCCCTAGCCGAATAGAGAACAGCATTACCATATTACTATATAAATTCTACAATTTATGATGATGTACTTCATGGTTAAGAGAGGTACAGACATTTTGAAAGGTACATTTTGAGAAGGTTGTTTGAAACAAGAAGAATATACTCCTAAGTTACAGAAACTTATTGGTGATTGTTGTAAAGCTACCCTCaccattcactttattaggaacaccaggTCAGgtggcagtagcacaatgcaaaaaacttcagttaatgttcacatcaaacatgagaatATGAAAAGGTGTGATCTCAGTGCATAGCTGCTTTTGGAACAGGtccactaatctttattgatgatgtaaatcatgatggtagcagcagaatgaattcagtaGTTTAAATGAAGATTTTGTCTCCCAAATGCcaagttacagagaaatgcatccaaattAATCGGAAGGAACTTTATCAAGACAATGATCGAATCTGACTTTATCAGGGctaaaaagtggaaggttttagactggccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78090 lncRNA upstream 17373 17431077 ~ 17440372 (+) True G65934
TU78075 lncRNA upstream 53866 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA upstream 53890 17402559 ~ 17403855 (+) False G65927
TU78094 lncRNA upstream 85606 17357338 ~ 17372139 (+) True G65938
TU78323 lncRNA downstream 92182 17577104 ~ 17578946 (+) True G66124
TU78331 lncRNA downstream 108710 17593632 ~ 17634867 (+) False G66128
TU78335 lncRNA downstream 108710 17593632 ~ 17634867 (+) False G66128
TU78342 lncRNA downstream 108710 17593632 ~ 17634867 (+) False G66128
TU78336 lncRNA downstream 108832 17593754 ~ 17634867 (+) False G66128
XM_034303560.1 mRNA upstream 19474 17426694 ~ 17438271 (+) False alox12
XM_026936020.2 mRNA upstream 38443 17405353 ~ 17419302 (+) True pelp1
XM_026936053.2 mRNA upstream 56357 17351919 ~ 17401388 (+) False arrb2b
XM_026936027.2 mRNA upstream 128199 17308623 ~ 17329546 (+) False mtmr1a
XM_026936030.2 mRNA downstream 2501 17487423 ~ 17500896 (+) True alox12
XM_034303569.1 mRNA downstream 23503 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA downstream 28590 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_026936048.2 mRNA downstream 35354 17520276 ~ 17523339 (+) True si:dkey-6n21.13
XM_034303563.1 mRNA downstream 88668 17573590 ~ 17586296 (+) True LOC113539911
XR_003404112.1 other upstream 695870 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 696098 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 696407 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 696638 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 696926 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 124782 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 279539 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 515236 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 628522 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 712390 18197312 ~ 18208564 (+) True G66492

Expression Profile