RNA id: XR_004578000.1


Basic Information

Item Value
RNA id XR_004578000.1
length 1530
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117597078
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13716325 ~ 13723916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTTATCAGCGGTGGCTAAGCTAACGTTATTGGTCCACACTGAGGTGTTGTCATTAACGGTTAGTGCATTACAGAGCACGGGCTTGGTATAAAGTATAAGTACGGGCTAGTTAAAGTCATctgtcacattcacacacacacacacacacacacacatgggcgGAAAGTGTTGTTTTCATGTGCTGCCTCGGGGGTTGGATTCACACAGCGTGGGAAACAGGAGTGAGGGCTCTGTGGGGAAATGCGTCGAGTTTAAAGTCGCTCTGCCGGTTGGTCAGCCTGCTGCCTTGTTTCAGCCAAAATGCAAATCTGCACTGAACTGTTCATCTTtgaaggaaaactccaccctgaaacacacgaAAAGTTTATAGTCAAATATTCGTGGTGTGTTTAGTGGTGCTGATTTGTTGGTTGGTCCTGTATTGTCAACATTCACGTAAGAAGTTAGTGGTTTTCTGACTCTGACGTCACAGGGCGACAttgcacagtacagtacattacaTATTGCACATTCCGGTCCTAAAGTGCTGAAATTCAGCACAGTTCAGTGATTTCCTGCTTTGAAGCTGTGGTTGTCTGTGTATTCAGCTGTGAGACTGCTTTGCTGAAGAAAATGATATTTCAGCGTTATTAAAGTAGCCAAGGAGCCGCAGACATAAAGAAATGTCTTTGTACTGAGGAGGGGAAGATCTTCATTAATATCCTTGAAGGAGTTTCAGCACCAGCTTCTGAACCGAACAGCTTTGTAAGACACCACATTCAGTAATGTTATACATTCTCCATGCATAACATTACCTCAGTTATTCTTCTTTGCAAGCTCTTTCTCCGCTTTCCGCCTCTTGTATGCAGCTATTTCCTCCATCTGCAAGCCATGTGCCATTTGCCTGCAAAATATATTGGAAAGGATGAACAagaaggacacacacagacacactgccaGGTCACAGGCCATGGGATGGCCCAGTCTTACCCTGGCTTTAGTTCAGGAGGGACAGGGAGTGGTTTGGTGAAACTGTCTCTCCCAATGAGCCAGTAGGTCTCTTCTGTGCCTTTGCCCTGTGGAAGAGAGCAGATGAGAGTGTCAGTGTGGAAGTAATGCATCGTATGCAAAGAAACAAGAAAGCAGCAAGAAACAGGGCACAGGAATGCCAGAATGCCAGTCTTGATTCAACCACATAAAATTTAAGATGTAGCTCTtttcagaatgaagaaaattaataaaaattattttagaacCAATACTAAACAAagtattgaaataaataaataaaattagttgCCAATTATATTTTTccccaatcttcaactgccaAGTTAAACCAGTCAGTAAAcctctgtagcctcagattcctgttcttggctgatagaagtggaacccgatgtggacTTCTACTTTTGTAGCCTAGCCACCTTAAGATtccatgtgcttgtgtgttctgagatgtttttctgctcaccacggttgtaaagagtgagtatttgaattactgtagccTACCTGTCAGTTCAAACCAATCTGgaaattctcc

Function

GO:

id name namespace
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75988 lncRNA downstream 146728 13564633 ~ 13569597 (-) True G64147
TU76015 lncRNA downstream 161248 13554864 ~ 13555077 (-) True G64164
TU76014 lncRNA downstream 161979 13554088 ~ 13554346 (-) True G64163
TU75699 lncRNA downstream 248923 13450437 ~ 13467402 (-) True G63907
TU75701 lncRNA downstream 249607 13447955 ~ 13466718 (-) True G63908
TU76107 lncRNA upstream 14673 13738589 ~ 13743598 (-) True G64222
TU76151 lncRNA upstream 145093 13869009 ~ 13872279 (-) True G64261
TU76137 lncRNA upstream 154114 13878030 ~ 13880728 (-) True G64252
TU76160 lncRNA upstream 164772 13888688 ~ 13890217 (-) True G64267
XR_003404036.2 lncRNA upstream 178982 13902898 ~ 13911755 (-) True LOC113540541
XM_026936261.2 mRNA downstream 21325 13684736 ~ 13695000 (-) True usp12b
XM_026937076.2 mRNA downstream 183061 13527886 ~ 13533264 (-) True cnpy4
XM_026936111.2 mRNA downstream 194799 13505741 ~ 13521526 (-) True ntn5
XM_026936415.2 mRNA downstream 275805 13437087 ~ 13440520 (-) False zgc:194312
XM_026935899.2 mRNA downstream 326360 13388333 ~ 13389965 (-) True si:ch73-335l21.4
XM_026936327.2 mRNA upstream 23323 13747239 ~ 13797445 (-) False col4a5
XM_026936326.2 mRNA upstream 23323 13747239 ~ 13797445 (-) True col4a5
XM_034303949.1 mRNA upstream 29882 13753798 ~ 13797445 (-) False col4a5
XM_026936919.2 mRNA upstream 188767 13912683 ~ 13967911 (-) True sema4f
XM_026936736.2 mRNA upstream 294542 14018458 ~ 14033040 (-) True dok1b
XR_003404098.1 other downstream 511863 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1438656 12272372 ~ 12277669 (-) False LOC113539775
TU74900 other downstream 1438713 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other downstream 1438713 12272372 ~ 12277612 (-) False LOC113539775
TU74889 other downstream 1467269 12247274 ~ 12249056 (-) False si:dkey-165a24.9
XR_003404087.1 other upstream 179915 13903831 ~ 13904021 (-) True LOC113540713
XR_003404068.1 other upstream 183921 13907837 ~ 13908000 (-) True LOC113540694
XR_004578131.1 other upstream 185251 13909167 ~ 13909357 (-) True LOC113540747
TU76338 other upstream 508893 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 1010740 14734656 ~ 14734727 (-) True trnae-cuc_13

Expression Profile