Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578004.1 |
| length | 357 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC117597081 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 23272162 ~ 23273614 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU82235 | lncRNA | downstream | 216779 | 23054514 ~ 23055383 (-) | True | G69320 |
| TU82146 | lncRNA | downstream | 462913 | 22808906 ~ 22809249 (-) | True | G69254 |
| TU82140 | lncRNA | downstream | 466254 | 22803386 ~ 22805908 (-) | True | G69248 |
| TU82121 | lncRNA | downstream | 500150 | 22771386 ~ 22772012 (-) | True | G69233 |
| TU82087 | lncRNA | downstream | 594244 | 22677376 ~ 22677918 (-) | True | G69203 |
| TU82439 | lncRNA | upstream | 4961 | 23278575 ~ 23278782 (-) | True | G69503 |
| TU82468 | lncRNA | upstream | 57402 | 23331016 ~ 23331535 (-) | False | retreg1 |
| TU82494 | lncRNA | upstream | 123050 | 23396664 ~ 23397963 (-) | True | G69551 |
| TU82581 | lncRNA | upstream | 179619 | 23453233 ~ 23454221 (-) | True | LOC113540115 |
| XR_003403997.2 | lncRNA | upstream | 179726 | 23453340 ~ 23454204 (-) | False | LOC113540115 |
| XM_026936334.2 | mRNA | downstream | 8865 | 23230050 ~ 23263297 (-) | False | si:ch211-106h4.9 |
| XM_026936335.2 | mRNA | downstream | 8865 | 23230050 ~ 23263297 (-) | False | si:ch211-106h4.9 |
| XM_026936336.2 | mRNA | downstream | 8865 | 23230050 ~ 23263297 (-) | False | si:ch211-106h4.9 |
| XM_026936333.2 | mRNA | downstream | 8865 | 23230050 ~ 23263297 (-) | True | si:ch211-106h4.9 |
| XM_026936974.2 | mRNA | downstream | 97783 | 23150126 ~ 23174379 (-) | True | mrc1b |
| XM_034304031.1 | mRNA | upstream | 11422 | 23285036 ~ 23291998 (-) | False | e2f5 |
| XM_034304032.1 | mRNA | upstream | 11422 | 23285036 ~ 23291972 (-) | False | e2f5 |
| XM_034304030.1 | mRNA | upstream | 11422 | 23285036 ~ 23291969 (-) | True | e2f5 |
| XM_026935796.2 | mRNA | upstream | 18434 | 23292048 ~ 23306932 (-) | False | lrrcc1 |
| XM_026935797.2 | mRNA | upstream | 18435 | 23292049 ~ 23306934 (-) | False | lrrcc1 |
| TU82055 | other | downstream | 636410 | 22632185 ~ 22635752 (-) | False | LOC113540019 |
| TU81579 | other | downstream | 1336993 | 21934526 ~ 21935169 (-) | True | G68760 |
| trnaa-ugc | other | downstream | 1853923 | 21418168 ~ 21418239 (-) | True | trnaa-ugc |
| XR_004578104.1 | other | downstream | 1901152 | 21368250 ~ 21371010 (-) | True | LOC113539989 |
| XR_004578082.1 | other | upstream | 20337 | 23293951 ~ 23306934 (-) | False | lrrcc1 |
| LOC117597073 | other | upstream | 206351 | 23479965 ~ 23483850 (-) | True | LOC117597073 |
| TU82584 | other | upstream | 206438 | 23480052 ~ 23480566 (-) | False | LOC117597073 |
| TU82579 | other | upstream | 219765 | 23493379 ~ 23493919 (-) | True | G69592 |
| LOC117597074 | other | upstream | 221421 | 23495035 ~ 23495897 (-) | True | LOC117597074 |
