Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578012.1 |
| length | 641 |
| lncRNA type | intronic |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC117597086 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 23931333 ~ 23932235 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU82956 | lncRNA | downstream | 8795 | 23922106 ~ 23922538 (-) | True | G69916 |
| TU82692 | lncRNA | downstream | 279467 | 23651051 ~ 23651866 (-) | True | G69691 |
| TU82643 | lncRNA | downstream | 336789 | 23594331 ~ 23594544 (-) | True | G69649 |
| TU82581 | lncRNA | downstream | 477112 | 23453233 ~ 23454221 (-) | True | LOC113540115 |
| TU83094 | lncRNA | upstream | 206058 | 24138293 ~ 24138492 (-) | True | G70025 |
| TU83095 | lncRNA | upstream | 213343 | 24145578 ~ 24145784 (-) | True | G70026 |
| TU83096 | lncRNA | upstream | 213655 | 24145890 ~ 24146241 (-) | True | G70027 |
| TU83122 | lncRNA | upstream | 246796 | 24179031 ~ 24179864 (-) | True | G70044 |
| TU83444 | lncRNA | upstream | 633966 | 24566201 ~ 24566511 (-) | False | ccdc24 |
| XM_026936459.2 | mRNA | downstream | 12027 | 23907159 ~ 23919306 (-) | False | ttc19 |
| XM_026936458.2 | mRNA | downstream | 12027 | 23907159 ~ 23919306 (-) | True | ttc19 |
| XM_026936460.2 | mRNA | downstream | 12919 | 23907159 ~ 23918414 (-) | False | ttc19 |
| XM_034303690.1 | mRNA | downstream | 34552 | 23859872 ~ 23896781 (-) | False | slc4a2a |
| XM_026937236.2 | mRNA | upstream | 3095 | 23935330 ~ 23942837 (-) | True | abcf2a |
| XM_034304135.1 | mRNA | upstream | 3095 | 23935330 ~ 23942381 (-) | False | abcf2a |
| XM_026935830.2 | mRNA | upstream | 11618 | 23943853 ~ 23973123 (-) | True | smarcd3a |
| XM_026935831.2 | mRNA | upstream | 11618 | 23943853 ~ 23969059 (-) | False | smarcd3a |
| XM_026935829.2 | mRNA | upstream | 11618 | 23943853 ~ 23969059 (-) | False | smarcd3a |
| LOC117597117 | other | downstream | 399317 | 23531238 ~ 23532016 (-) | True | LOC117597117 |
| LOC113540013 | other | downstream | 413663 | 23516930 ~ 23517670 (-) | True | LOC113540013 |
| LOC113540114 | other | downstream | 414974 | 23515699 ~ 23516359 (-) | True | LOC113540114 |
| LOC117597116 | other | downstream | 416398 | 23514374 ~ 23514935 (-) | True | LOC117597116 |
| LOC113540012 | other | downstream | 417294 | 23513456 ~ 23514039 (-) | True | LOC113540012 |
| XR_003404116.1 | other | upstream | 104483 | 24036718 ~ 24036854 (-) | True | LOC113540746 |
| TU83344 | other | upstream | 372139 | 24304374 ~ 24304926 (-) | True | G70255 |
| TU84653 | other | upstream | 2441523 | 26373758 ~ 26376088 (-) | False | ltb4r2b |
| TU84853 | other | upstream | 2539845 | 26472080 ~ 26551030 (-) | False | G71596 |
| TU84852 | other | upstream | 2604867 | 26537102 ~ 26551030 (-) | False | G71596 |
