RNA id: trnat-ugu_4


Basic Information

Item Value
RNA id trnat-ugu_4
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnat-ugu_4
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27396151 ~ 27396223 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAATTCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85300 lncRNA downstream 109453 27286239 ~ 27286698 (-) True G71955
TU85295 lncRNA downstream 112494 27281049 ~ 27283657 (-) True G71952
TU85288 lncRNA downstream 116784 27277017 ~ 27279367 (-) True G71951
TU85287 lncRNA downstream 121644 27274181 ~ 27274507 (-) True G71950
TU85254 lncRNA downstream 181752 27214152 ~ 27214399 (-) True G71918
TU85431 lncRNA upstream 5447 27401670 ~ 27402635 (-) True G72073
TU85433 lncRNA upstream 6914 27403137 ~ 27406819 (-) True G72074
TU85454 lncRNA upstream 48520 27444743 ~ 27445114 (-) True G72094
TU85461 lncRNA upstream 78542 27474765 ~ 27477666 (-) True tsen15
TU85953 lncRNA upstream 173021 27569244 ~ 27970795 (-) False G72517
XM_034304155.1 mRNA downstream 10618 27381175 ~ 27385533 (-) True si:ch211-107p11.3
XM_034304156.1 mRNA downstream 10618 27381175 ~ 27385533 (-) False si:ch211-107p11.3
XM_034304154.1 mRNA downstream 10618 27381175 ~ 27385533 (-) False si:ch211-107p11.3
XM_026936091.2 mRNA downstream 85175 27287161 ~ 27310976 (-) True LOC113539949
XM_026936577.2 mRNA downstream 134250 27237944 ~ 27261901 (-) True LOC113540236
XM_026937159.2 mRNA upstream 17233 27413456 ~ 27414564 (-) True insl5b
XM_034303470.1 mRNA upstream 19044 27415267 ~ 27432569 (-) False LOC113540508
XM_026937061.2 mRNA upstream 32197 27428420 ~ 27432678 (-) True LOC113540508
XM_026937060.2 mRNA upstream 32197 27428420 ~ 27432569 (-) False LOC113540508
XM_026936529.2 mRNA upstream 37469 27433692 ~ 27441494 (-) True cmpk
trnat-ugu_3 other downstream 722 27395357 ~ 27395429 (-) True trnat-ugu_3
TU85245 other downstream 191965 27203783 ~ 27204186 (-) True G71909
TU85159 other downstream 295293 27096602 ~ 27100858 (-) True G71832
TU84853 other downstream 845121 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 845121 26537102 ~ 26551030 (-) False G71596
XR_003404034.2 other upstream 32197 27428420 ~ 27432678 (-) False LOC113540508
XR_004578066.1 other upstream 151529 27547752 ~ 27555986 (-) False pcyt1aa
trnat-ugu_7 other upstream 224833 27621056 ~ 27621128 (-) True trnat-ugu_7
trnat-ugu_9 other upstream 228513 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_003404039.2 other upstream 619841 28016064 ~ 28041785 (-) False prkag2b

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnat-ugu-38 True 73 mRNA 0.56 1 NC_048582.1 23641871 ~ 23641943 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_80 True 73 tRNA 0.56 1 NC_035899.1 6988739 ~ 6988811 (-)