RNA id: XM_034308978.1


Basic Information

Item Value
RNA id XM_034308978.1
length 2792
RNA type mRNA
GC content 0.54
exon number 22
gene id telo2
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30988123 ~ 31014649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACACGGACGGTTTTAGTGTCTGGACCTGATCAAGATGGCGGATTTTGGTGCCTAATTTGAGACTTCGCGCATCAGTAAACAGATGTAAACaaagtgtttaaaatatattcgctggagtttatttattttaatatcgAAGAAAAGCGAATAAACGCTGTAGCTTTTGTGTTCGGGGTTTGagggagttttttttaaagtgtgtgtgatggagcgGCAGTGTGCTGAGGCGCAgctgcgtgtgcgtgtgtgtgagtgtgtgaagcgCATCGCCACGTCTCGGGATCACACAGAGTTCCACGatgctctacacacactcacacactacctGGAGGGCGGAGACGCCTCGGCCGGGGACAGGGCTGAATTCCAGCGAGCTCATTACACACACGTCCTGCAGGCGCTGCTCACCTCGCTCACCTCTGACTGCTTCCACACGCTGAGTGATGAAAAGCGCAGGGAACTGTGGGACGCATTCTTCCTCCGAGGGCCTCCAGACCAGGCGCTGCTGGTGTTACTGGACTCCATCAGCTCTCAGAGtgagagTTCAGCTCTGgaccggtgtgtgtgtgtgttggaggcgTTCCTCACAGCTGGGCGTGTCGGTGTGCTGTTGTGGTCTCGCTGTGTGGACACTGACTCACGCTGTGACTCCGCCCACCTCCGAGAGGTCGTGTTGAACCGGCTGGCGTCTCTGCCTGCTCTGATCGCCAACCGGctcggcacacacacaccgccgtCGCTCACAGAGCAGCAGTACTACACACACCTCGCTCTCCACGTCCTGCACACACTGGAGAGGATCTGCAGTGCTCTCAGAGCGGGACAGGACTGCTCTGTGGTGTTTGTGTCTCAGCTGTTGGGGAAAGTGTGTATGCAGGGACATGGAGagttggTGTTTGGGACTCTGGCTCCCCGgctctcctctctcacacactcggACGCTCTGTGGCGGCGTGTGAGCTGCAGACTGCTGGAGAACGTACCGGAACGCTGGGTGGAGAGCGTCATCACGCCACTCATACACAACCTGCAcggGTCATCAGCGTTGTCAAGGGTGATGGGGAATCTTGTGTTAAAGAATAAGAAAGTTCAGTTTGTTCTCACTCACAAACTCCTGCTGCTGCAGTATCATCACCCggtgcgGGTGTTGAAGAGTGTGTTGGGGTATCTGGCGCTGGATAAAGAGAGAAGACCACTTCTcaaacaggtgctgcgcagtgtgtgtcaggtgtggTGTAACAGCAGTGCAGTGAGACACACTCCAGTGGAGCAGCAGCTGTACGTGAGTAAAtccctgctgctgtgtgtgtgtctcctccaTCACACTGAGATACCAGAGCTACGGGAagACTTGttgcagtgcatgctgggaggaGTGCAGTGTCGGCTGGACAGCAGTGTGGAGCGCGTGCGGAGGATGGGCATGGTGGTGGGCGAGTGTATCAGCCGGAGATTAGACACGCCCACCTCGCAGCTCAAATTCCAGtatgaggaagatgaggagagCAGAGAGTTGCTGGCTCTGATGGAGCCTCAGACTaaagaggatgaagatgaaCAGCAACCACCTGATGCGACACATAGACCTGAGGCCAAAAGTCAGAGTTCATCAGGACAGTCGGTGACATCACAgctcccaacgaccaatcagaCGTCTGCAGCTGGACAAGGCAGTGATTCTGAGCTTGACagtgatgaTGAGCTCACTCCGTATGACATGTCTGCTGATCAGGTGAAGCAGAAGGCGACTCCGCCCCGCTACGTCCGAGACTGTCTGGACGCCCTGATGTCGTCTGATGACCCGGAGAGGGTGGAGCTGAGTCTTCAGGCAGCAGATGGGCTTCTGAGGAGGAACATCAGCACCACACGAGAGgtgagCGTACAGTTCAGTAAAGTGCTGTTACACCTGGAGGACAGGTACAACATCATAGGCTTCTACACACTCCGGCAGAACGCCATGGTGGCCcttgctgtcacacacacacagccgGTTGTGGAATATCTGACTGCTGAGTTTTACTCTCTGAACTACAGCCTGAGACAGAGGCTCGACATCCTGAGAGTCCTTGCTGTCTCCGCCCAGGAGCTCTCTGAGCCAATCACAGAGAAGAGGGTGGAGTCACAGGCAGTTGCCAAGGTGACACCCCTGGACAGGTGTGGTGAGCTGGAACACTGGCGTGAGGTTGTGGAAAAACGCATTCAGAGTAAGACACGGCGCATCAGtaagGGTGTGTCACAGCCCCATAAAGCCACTCCGAACCGCTACGCTCCTGTCGCTGGCTACTTCTTCTTTCCCCTGTTGAGAAACTACgacagggtgcaggtgacctttgaccttttggGCAGTGACCACCTGGTGCTGGGAAGACTGGTACACACACTCGGACTGCTAATGCACCTGGCCATCAATGCtccgGTGGCGACCCAGATGGGCAAAGCTCTTCTGGACTTTGTGTATGCACGCTTCCATGCTGACCAgatgGTGAGGAGAGGTGTGTTGTTctcagtgtgtgctgtgtttttgagCATGCCCAGTGAAAATCTGCTGCTGGAACTCAGTGATGATCTAGTAGAGACCAGGTCATGGCTcgcagatgtagcAGAGACTGATCCTGATGCAGACTGCCGGAGTTTGGCTGTACAGAGTTTAGTGCTGCTGgaaaaaaacctcaaaactCACCTGCAAAACCCCATGCTGGAaagctgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K11137 TELO2, TEL2; telomere length regulation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20049 lncRNA downstream 99080 30841965 ~ 30889214 (-) True G17025
TU20022 lncRNA downstream 221585 30766189 ~ 30766709 (-) True G17000
XR_004577837.1 lncRNA downstream 223817 30763585 ~ 30764477 (-) True LOC117596846
XR_004576931.1 lncRNA downstream 348270 30637849 ~ 30640024 (-) False LOC117595754
TU20275 lncRNA upstream 14807 31029456 ~ 31029677 (-) True G17222
TU20318 lncRNA upstream 82183 31096832 ~ 31097965 (-) True G17265
TU20331 lncRNA upstream 112084 31126733 ~ 31130151 (-) False G17277
TU20335 lncRNA upstream 112084 31126733 ~ 31130151 (-) False G17277
TU20336 lncRNA upstream 112084 31126733 ~ 31130151 (-) False G17277
XM_026947949.2 mRNA downstream 5379 30970017 ~ 30982915 (-) True LOC113547558
XM_026944717.2 mRNA downstream 401604 30582017 ~ 30586690 (-) True xrcc2
XM_034305563.1 mRNA downstream 426383 30400155 ~ 30561911 (-) False kmt2ca
XM_026947966.2 mRNA upstream 151777 31166426 ~ 31312036 (-) False ntng1a
XM_034308038.1 mRNA upstream 151777 31166426 ~ 31312036 (-) False ntng1a
XM_026947963.2 mRNA upstream 151777 31166426 ~ 31312036 (-) True ntng1a
XM_026947965.2 mRNA upstream 151777 31166426 ~ 31312036 (-) False ntng1a
XM_026947947.2 mRNA upstream 311265 31325914 ~ 31327457 (-) True prmt6
LOC117595698 other downstream 198884 30785963 ~ 30789410 (-) True LOC117595698
TU19913 other downstream 345320 30640698 ~ 30642974 (-) True G16900
trnah-gug other downstream 355157 30633066 ~ 30633137 (-) True trnah-gug
trnaf-gaa other downstream 999004 29989218 ~ 29989290 (-) True trnaf-gaa
trnar-ccu_3 other downstream 2731977 28256245 ~ 28256317 (-) True trnar-ccu_3
TU20760 other upstream 985976 32000625 ~ 32052554 (-) True G17630
trnar-ccg other upstream 1004446 32019095 ~ 32019167 (-) True trnar-ccg
trnar-ccg_1 other upstream 1063894 32078543 ~ 32078615 (-) True trnar-ccg_1
trnar-ucg other upstream 1071080 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_2 other upstream 1071828 32086477 ~ 32086549 (-) True trnar-ccg_2

Expression Profile