RNA id: XM_026947923.2


Basic Information

Item Value
RNA id XM_026947923.2
length 8510
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC113547543
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32115502 ~ 32187493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcacactctgatCCGGATGGAGTTGGGGTGAAGTGGTGTGATTGTGCACACTTACCATGGCTCACCTCGGGATGCTGGGCTGCATGCTGAACCGCAACTCGTCTGTCAAAAGCCTGATCTGTGACCTGTACTGCGCCTTcaacacacagTGTAAGAAGGATGGCCATGATCCGAGTGAGCTGTCCCCCATGTCCCCCATGTCCCCGGTGCCCATGGACCAGCTCTTCTCCTGGCCCGGACCTAAAACCCTGCACCTGCGCCGAACTTCCCAGGGCTTCGGCTTCACGCTGCGCCACTTCATTGTCTACCCACCTGAGTCTGCCGTACACTCCTCGTTTAAGGATGAAGACAATGGAAGTCGAGGGAGACCGCGGTGTCGTCTTGAGCCGATGGACACTATCTTTGTGAAGCAGGTGAAGGAGGGAGGCTCCGCCCACCAAGCTGGACTCTGCACAGGTGATCGTATAGTGAAGGTGAACGGCGAGAGCATCATCGGCAAAACGTATTCACAAGTCATTGCTCTCATACAGAACAGTGACACGTCTCTGGAGCTCTGTGTGATGCCTAAAGATGAAGACATTTTGCAGTTGTTCTCCCGGGACATCACAGCTCTGGCCTATTCCAAAGATGCATATCTCAAAGGGAATGAAGCATACAGTGGAAATGCACAGAACATCCCAGAACCTCCTCCTATCTGCTACCCACGGATAGAGCCTAAGACGTCAGGGAtgacacacactgatgagcCTTCTGCTCCCTCAGGTGCTCATGGAGTGTTGTCCCAGGGGGCGGAGCCAAGCTCTGATGTGGGCTGTTGTGTGGAAGTCCCTATTACACAATTGTCCCCATCGCCTCCTCGCTCGCATGACTCCAAACTCCAGACTGTTGCATGTGTATATGATGAAAGTGTGCGGGGGGCAGCGGCAGAGGTTTCGGATTCCCTGGAATGTTCTCCTCACCCGTATGACACAAACTCTAACCACAGGTTGcaggagacaaaaaaacacCGCTTTGTACCTCATCCCTTGAAAACCTTTCCTCAGTCCGTCCGAGATCCCAAACCACACCTTGTTCTTCTTCTGCTAGAGGGACACAGTTGCACTACACACCAAAAAGACTGTCAGAATCCCCAGGATTCTCCACACACTTTCCTATACACACTCCTTTTCACCCTGACTCCACATCTACGCCATCCAGTAGACATGCCATGACCATTCACGCCCTCTCCTCCAACTGTTGCATCATCTCCCTGCTCCCCAATGCATCAGAACATTGACTGGAGGAATTACACCACCTACAAGGAGTACATTGACAACAAGCGCCTCTATACGTACGGTAGCAGGACAATCCAGGAAAGACTGGACAGCCTGCGGGCGGCAAGCCAAGCTAGTAACGCAAACACGAGTACAGAGGGCGTGAATGGATCCCAGCCAAGGCAGAGGAGCACTTGTCACGAGCGAGGTCCTGCAAATTCTGGAGTCCAATCTCTATGCAGTGTGTCTCAGGAAAGACTGGAAGTAAAGGAACGAGCAACGTCAAGGGATTGGCATCGAAGTGCATCACAGGATGCACTTCCTTCATCCACAAAGAGCACATACAAACCTCGGGCAAGATCTTGCGACTACCTGGGCAGACAGGCTGAAAGCAGGGTGTCGTTGAtggacagaagagtttatggAAGGACAGAGACGGAGGAGAAGGCACTTACTTGCACTGGAGAGGAGACCAGAGGCTGCAGGCAGTCACTCTCATTAGGCAAAGTGGCACAGACTCAAAGGACCACAGTGGGTGGATATGGCAGTTTCCCAGGACTAAATGCTAAAAGTAAAGGTACAGATCCACAGATACTGAGCTCCAGAGTGGAGAGTCTGGGTAACACTGCTGCTTCTAAGACACGGCTCCCCATTCAGACCTCTGTATTGGACGGCTCCTACGTAGCCAAGGCTCTTGCTTCTTTAAACACAGCCGCAGTGACCACGAAAAACCAAAGAACCGCCCTTGTGCCAAATCACATGTCTCCCGGACGGCAAACTGAGAGCCATCGGGATCCCATTGGTTCCATTCCTTGCCCTGACCAATCCAAAGGTCAAAGGACACAGCAGGATGGGTCAGTAGCCACTAATGGCTCAATTGTGGAAGGTCTTGAAGGTGCAGAGGCCACAGTGGTGGTGGTGAGGagggagaaaacaaaaaaatcaggcCCATTACCTCTCAGACACCCGTCCTACATCCAGGCTGTGAATGACGGAGCAGATAGAGTGGAGAAAATCACAAAGACACCAAAGTGCTGGAGGTCCAACGATGCTGTGCAAGACGGGTACAAACAATTGCTCGGAGAGGAATACAAACCCTCAGGATCCGGCCAACTGCATGAGTCACTCGACTCTATCCCCTTCATTGATGAACCGTCCAGCCCCAGTACTGACCTCGATGACCCACAATTCCCTGTTTGCACCATCGTCTCTGCTGTTCCGCCGAGCCCCACCTCCTCCTCCGCCGTCTTTCACCGCCAGCTCTCTCATGACCAAGactcgTTGCGGCTCACAGTTCTGGATTCAGATTCCGCTGCTAAAACAGAGCGCTCCAAGTCTTACGACGAAGGACTGGACAACTACAGGGACGAAGAACGAGGGAAACTGATAACGCACATCGGTCTGAGAGGTCTTAGGAAGaCTGTGGATCGGTCCTCAGAAGATTCTGGCTCCAGGAGAAACTCTTTGTCAGATGTCTTTGTTAATGCTACTAAGGAGGGAGTCCTGCACTTCCGCCAGTTCAGTTCAGACAAGggcaagCGTGTAGGCGGCGGCATGCGGCCGTGGAAGCAGATGTACGCTGTGCTCCGTGGCCACTCCCTCTATCTGTACAAGGACAAGAAGGAGGGGCAAACGCCAAACTCGCACACGGAGGAGGAGCCTTTGTCGATCAGCATTAAAGCCTGTTTGATTGACATCTCCTACAGCGACACGAAGCGGAAGAACGTCCTGAGGCTGACCACGTCGGACTGCGAGTACCTGTTCCAGGCCGAGGACAGAGAGGACATGCTGGCCTGGATACGAGCTATTCAGGAGAACAGCAACCTGGATGAGGAGAACGCACTGATTACAAGCACAGACCTCATCAATCGCAAAATCAAGGAGTACAACACTCTGATGAGtccaCCCTGCAGTAAGAACGAGCCGTCCCCGAGGTCCTCTCGTCAGTCTCTGAGTATCAGACACACTCTGCTGGGGGGGAACAAAACGCCGAGCCCTCACTCGCCCCACAAGGAGCAGGAGAGGAAAATCCTCCACAGAGATGAAGCGAGTCCACCGAAGGATAAGGGACTGCGGAGGAAAGGGATCCCGGGGCTGATGAGGAAGCCATTTGAGAAGAAAGTTGCTCCTGGAGTCACATTTGGCGTGAGATTGGACGACTGTCCTCCTGCTCACACTAACAGAtttgtgcCCCTGATCGTAGAGGTGTGCTGTAAGCTGGTGGAGGAGAGGGGTCTGGAGTACACGGGGATTTACCGAGTGCCGGGGAACAACGCTGCCATCTCCAGCATGCAGGAGGAACTGAACAGAGGAGTGGGAGAGATCGACATTCAGGAGGACAAATGGAAGGACCTCAATGTGATCAGCAGTTTATTAAAATCTTTCTTCCGGAAGCTTCCTGATCCTCTCTTCACCAACGAGAAATACGGAGACTTCATTGATGCGAACAGAACAGAGGATCCAGTGGAGAGGCTAAAAATACTGAAGAGGCTGCTTCACGAGTTGCCAGATCATCACTACGAGACGCTGAAATTCCTCTCAGCTCACCTGAAAACTGTGGCTGAAAACTCCGAGAAGAACAAGatggaGCCGCGGAACCTGGCCATCGTGTTCGGCCCCACGCTGGTGCGCACATCTGAGGACAACATGACACACATGGTCACACACATGCCTGATCAATACAAGATTGTGGAGACACTTATTCAACACTACGACTGGTTCTTCACTGACGAGGGAGAAGAGGAACCGGAGACGGTGGTCCAGACGGAGAGCGCAGTGGAGACGCAGCCCGTTCCCAACATCGACCACTTGCTCACCAACATCGGCCGCACTGGCGTCTCTCCGGGAGAAGTGTCAGATTCACCCACTAGTGATTCTGCCAAATCGAAGggttcGTGGGGGTCTGGGAAGGACCAGTACAGCCGAGAACTGGTCTCCTCCATCTTTGCTGCAGCTAACCGCAAACGCAAGAAGCCCAAAGAGAAGGTGCATGCCAGCAGCTCTGATGATGACCTGGATGCTGTTTTTCTTGAGAGTGAGCTGCAGAACCAGAAACTAATAGCAGGAGACTCACATGGTGggaaagaacatgaaaaaatacCCAAGGGGCGCAAAGAGCACAGGAACTCGTTCTTTTTGAAGAAACCGTCTCCTACTAAGATCTCTGAAACCCAAAAATATGCTACACTGCCCAGTCTCCGCCTCCGAACGCCAGCTCCTTCCAAAAGCTCCACACCTGAATCACCTTCTCAGGTGGAGGACCTTGGCATCATGAACCCAGGAACATCCGGATCCAGGAATCGGTTGAGAATTTGGGACACAGTAGCTCCAGCTGCCACAGACCTACCTCCAACCGGTCCTGTCGGAGGATCAGCCATGGCAGAAGTGAGCTCCATCACTTCGGATTACTCGACTACCTCCTCCATGACGTTCCTGACGGGGGCGGAGTCAAGCGTGCTCAGTGCAGATTTGCAGAGCCGGGGTGGAGACGAGGCCGATGACGAGCGCAGTGAGCTGATCAGCGAGGGACGACACatggagacagacagtgagacggAGTTTCCTGTTTTTATCAGAGGCGCCACGACTCCTGTTACCCCATCCAAGATCGTCCCTAGAAGTTCAGAGTGTACTAATGTTCAAAAGCCTTTAAACCGCTACATCCTGCCGTCACAAAGGCTGACTGCATTCAATACGTTGTCCAAGAGGCTGTCCTTGCACCAGAAGACAGACAGCGAATCGTCATTAGAAGTTGGAGCCAACCGAGAGGGTGAGAGGATGAGCCGAAGCGAACCGAGCCGTCTATCTCGCGTTCTGGAAGCAGTGAAAAAAGGGCGCTCTGTGGGAAGCCTTAGCTCCgcctcttcctcctcccatGGCCAGACAGAACCAACAAAGCGCTTGAGTATCACCGAGAGGTTGAAGTCCCACTTCCGCTTGTCTGCAGACGATATGTTTGGGATTGGAGGGCACAAAAATagcaggaagaaagagaaaagagtcCGTCGGAGACACACTGTGGGTGGGCAGCGAGACTTTGGAGAACTTGCAGTCATTAATGACTGGCGTGAACAGGGTGGTGCCgagaagggggcggagctttcaGACACGGACCGGCTCAAACTTCAAACCTCGAGAGAGATTTCCATTCGGGACTGGATCACCCGCGAGCGCTGGCATCCTGGGACTTCACGGGCTGGTTCAccggggtcaaaggtcatgaaGGGGACTGGCGAGGGTTCGAGTCGTCCTGCTTCTGTGCCAAGCTGCCAATCCACTGTGGATCGGTTGAATGGGGGGGAACCAAAGTGCAAAGGCAAAGCCAACCTGAACTCGGGTTCCGATGCTCACCCACATAAACTTTCCGGGGCTCAAGTTGTGCGCTCGCAGTTCTAccaatgtttataaaaatgtctgcatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgtatgAAACAAATGTGAGTGAAtgaaagaattaattaattaatgttcatAGAGGTACTGCACAatattttttatccttttaatcCCTTCTCCTCTTTTTaacaaagtatatatatatatataaatataaatatatataaatataaattgtatatatCTATGTGTGTATAGGCTCATAAGAGGACTAACTGGAGTAAAATGTATCAGATTTGAATTGTAATCTCAATTTTATGGATCAAAGTTGTTAAATTTTCCCTCCTGTAGTGGATTTGCCAAGACACATTTGGTGTCAGATGTTTGGTGACGGTGTCGCAGTGGTGCTAATGTAGCTTACAAGTAAGAGAAGTCTCTCATAAATCCCCAGGTAATAAAGTAATTTTATACAGACTGAGTGCAAGCCCCTGTAAAGATTATGCCATGttttaccttctataaaatgagCAGCAGAAATAACCCCAGGTGATATATATCCTGTCTGAATTGGCACGTTGGTAAAAACTGCATTCTATCCagtgggaaaagaggttttgcactttttctttagTATAAACTCACTCCAGGAAGTGCTTGCTCTTTTATCCCactgaaactaaaataaaaccgAGTTTAAAACACATAACAGAAAAATATTGAGGTGTCAAAAGGACGTGTCAGAGAAGCAATGTTTCCAGGGGTTTTAGGTAAACTACCAAGTTCCTAACATGGGTACAGCATGCATACGCTATGGTCACGTGATCAAATGCAACAAGCACTTATAGTACACATGGAATATTTAGTGTGACGAGAAATCACGTATCCCGTGTGAACGTCCTCCAGCAGCAACACTGAACAGGCAAATGTCGGGAAATGTAATCCCATCTGAATAGTACTTAAGAAAAATTCTGATTGTCCGTGATGGCGGCCCCCGCAATATTCCAGTGTTCAGCTACATGCTGAAGTTTAGTTCATGTTTCTAGATGACAGTAGTCCTACTGTGTCCTAACCCACATCAGCACATCTGTAGATACAACGTGGAGAAGATTTTGGTTGAGATAAACTTCCATGACTTGTTGGCTACATTTCCCATGACACTCCAGTGCAAAAACTAAAGACGCAAATGTCTCACAAGCACGTCTGGGTTGATCGACTACATTTGTGGTAAAGGTGAAATggtttacatttgattttttttttgctgaaattttaGAAGACAGTACTGGAAAGGATGTTGTGGTTAAGGTCTTCTCCTGAAACCCCAGTAATATGAAGTCTTTAGACGATATAAAGAACATACAATACAACCAATGTTGTATATCTTACCACCAGATTTCCTGATTGTAAGACTTGTTTTTTAGCCCTCTAGCATGTGCAAAGCATGTTCTTGTGCCCATTTGTTAGAGTGTTTATGGTAGGAGTGCTACTCCAGCAATTACGGTGAGGTTACATGAAGATGCACCACTGTTAGCGTAGAAAATCCCATAGCCACTCTggaaaaaatgagcaaatgagCATTTTGGTAAGGGTAAGGACTACAGAAGGAAACAACACAGCACTAAATTATGACAACACTaaccctacgttcacactagcaagtatCGAGTCACTTGTGTAACTTGTAGtttgtcgcttgtgggcgttgcctgtccagcatttttttttcctagttgtGCGAAATGTTTGTAGCTATACATAGCTTCTACAGCTGAATAGttacacacaaattaaataatgtgttaatcagtgtgaaaatccgTTTACATAATGGTACATGCTTAGCTTTGTACTAGCGTCCTTagcagattagattagcaaagcgagctaactaTACAAGCTATGTACActctataaacatttaatgagaggtcatatATGACAGGACAAAATGGAACCATGGTTATAaggttttcttccttttttgtgcATCAGACAGTAAGCAGGAACTCATTGCAGGTAGGAAGTAAAGTCGTTAGCTGGGACCTGAAGAAACGTCAtggaggaatcattcgagccagCCATTTTGATCTGCTGCTTTACAGCGTCACACATAATTTGcgtagaattgagaaaatccaTGTTCAACTCTCTGTGAAATCGTCGCTCTGTGTCGCTTgacgcttgctagtgtgaacgtagggtgATGGGATAAACACTAAACTAGATTACAATAGTGGGAGTGTTTAAAGGACAaacattaatgtgaaaaaagCCTTCCTTgagattttttatattattctgAAGGTGAAGTCCACGTCAGGAATtgttctctgtgctgtgtgctgtggaaagctctttttttttttacagtgcaatGAAGCAGCCAGGCGTCACGAAGCGTCGAAGCGAGAATGAAGtcaatttatatttctatatataggAATATAAAAAAGACAGAGCCTTTATACTGGTACTACAGGAAGTGCTAAGCATTAAAGTCACACAAAGTCATGTCTGTCTGTAATGAAGTGCCTCGTACAGCTAATCTCTGGTACaggaacttttttcttttaaagaactGTTGCTCTTGTCTAATGTTGCAAATTTTTATCACCAACTCCAAATGTGATCTAGATTTTTGTACGAAACAATGTGACCGCAAACCAGTGCTTCCAGTCTTATCTCATCTTTCATTTTGTTACTGGTCcatgatatatttttacatgCACATGTTGATATATTGAGATGGTAATGTCTGGGTCCGAGGTTGGACAGactgaggaagtgtgtgtgcatgacatAAACTGATGCATGTGTGATGACCAAAATGCtacacaaaaaagagagaaggttAAAAACACTGGAAATAAATTGTCTTTTTGAGA

Function

GO: NA

KEGG:

id description
K20315 ARHGAP21_23; Rho GTPase-activating protein 21/23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20762 lncRNA downstream 17724 32053783 ~ 32097778 (-) True G17631
TU20608 lncRNA downstream 216746 31898557 ~ 31898756 (-) True G17498
TU20551 lncRNA downstream 296865 31818258 ~ 31818637 (-) True G17441
TU20536 lncRNA downstream 369371 31743216 ~ 31746131 (-) True G17426
TU20535 lncRNA downstream 376053 31737829 ~ 31739449 (-) True G17425
TU20998 lncRNA upstream 166367 32353860 ~ 32354074 (-) True G17850
XR_004578529.1 lncRNA upstream 167703 32355196 ~ 32357754 (-) True LOC117597779
TU21279 lncRNA upstream 351261 32538754 ~ 32608561 (-) True G18087
TU21339 lncRNA upstream 453862 32641355 ~ 32645315 (-) True G18133
TU21342 lncRNA upstream 462731 32650224 ~ 32650785 (-) True G18136
XM_034304521.1 mRNA downstream 124454 31932469 ~ 31991048 (-) False arhgap29a
XM_034304520.1 mRNA downstream 124454 31932469 ~ 31991048 (-) True arhgap29a
XM_034304523.1 mRNA downstream 156826 31932469 ~ 31958676 (-) False arhgap29a
XM_034308814.1 mRNA downstream 503530 31587218 ~ 31611972 (-) True rnpc3
XM_026947947.2 mRNA downstream 788045 31325914 ~ 31327457 (-) True prmt6
XM_026947943.2 mRNA upstream 32402 32219895 ~ 32237813 (-) True prtfdc1a
XM_034300539.1 mRNA upstream 32402 32219895 ~ 32237434 (-) False prtfdc1a
XM_034306549.1 mRNA upstream 51447 32238940 ~ 32245611 (-) True enkur
XM_026947939.2 mRNA upstream 334127 32521620 ~ 32539347 (-) True LOC113547553
XM_034304845.1 mRNA upstream 375044 32562537 ~ 32575431 (-) True LOC113547549
trnar-ccg_2 other downstream 28953 32086477 ~ 32086549 (-) True trnar-ccg_2
trnar-ucg other downstream 29701 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_1 other downstream 36887 32078543 ~ 32078615 (-) True trnar-ccg_1
TU20760 other downstream 62948 32000625 ~ 32052554 (-) True G17630
trnar-ccg other downstream 96335 32019095 ~ 32019167 (-) True trnar-ccg
trnar-ccg_3 other upstream 20132 32207625 ~ 32207697 (-) True trnar-ccg_3
TU21290 other upstream 402409 32589902 ~ 32596805 (-) True G18097
TU21711 other upstream 1383886 33571379 ~ 33571830 (-) True G18432
TU22331 other upstream 1827555 34015048 ~ 34016030 (-) False G18848
TU22333 other upstream 1827555 34015048 ~ 34037333 (-) False G18848

Expression Profile