RNA id: TU108826


Basic Information

Item Value
RNA id TU108826
length 257
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G91764
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 84295 ~ 85545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGTCAGTACTTTACTGTTGAGGTTTTGAGGTTGAGTCAGTACTTTACTGTTGCTGAGGTTGTGAGGTTGAGTCAGTACTTTAATGCTGAGGTTGTGAGGTTGAGTCAGTACTTTAATGCTGCAGTTACCTTGATGTTGTTGAGGTTGACCTCGGTGAGCGTGGGGTCGTTGTTCTTTATCCTCTGCAGAGTTTCCTCCACGTTAGTCGGGTTTGGCGGCTCATCAAAAACAGGCTTCACTTTTTCTCCTTTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108814 lncRNA downstream 21021 53728 ~ 63274 (-) True G91752
TU108859 lncRNA upstream 97989 183534 ~ 183796 (-) True G91786
TU108981 lncRNA upstream 213002 298547 ~ 299097 (-) True G91873
TU109450 lncRNA upstream 307487 393032 ~ 395264 (-) True G92197
XR_004578333.1 lncRNA upstream 404017 489562 ~ 490796 (-) True LOC117597554
TU109484 lncRNA upstream 518505 604050 ~ 606076 (-) True G92220
XM_034305551.1 mRNA downstream 23934 51413 ~ 60361 (-) True leo1
XM_034305310.1 mRNA downstream 64726 6409 ~ 19569 (-) True LOC113534766
XM_034305517.1 mRNA upstream 31018 116563 ~ 136463 (-) True scg3
XM_026927755.2 mRNA upstream 31018 116563 ~ 136349 (-) False scg3
XM_026927617.2 mRNA upstream 54725 140270 ~ 141515 (-) True LOC113534665
XM_026927607.1 mRNA upstream 58048 143593 ~ 144961 (-) False LOC113534658
XM_034304930.1 mRNA upstream 68522 154067 ~ 155144 (-) True LOC117597506
TU108836 other upstream 57880 143425 ~ 144961 (-) True LOC113534658
TU108961 other upstream 217091 302636 ~ 323610 (-) False dmxl2
TU109527 other upstream 621205 706750 ~ 710654 (-) True G92240
TU109528 other upstream 622215 707760 ~ 747530 (-) False G92240
XR_003402800.2 other upstream 750949 836494 ~ 846935 (-) False slc27a2a

Expression Profile