Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU108836 |
| length | 678 |
| RNA type | TUCP |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC113534658 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 143425 ~ 144961 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0002252 | immune effector process | biological_process |
| GO:0002253 | activation of immune response | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:0002682 | regulation of immune system process | biological_process |
| GO:0002684 | positive regulation of immune system process | biological_process |
| GO:0050776 | regulation of immune response | biological_process |
| GO:0050778 | positive regulation of immune response | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU108826 | lncRNA | downstream | 57880 | 84295 ~ 85545 (-) | True | G91764 |
| TU108814 | lncRNA | downstream | 80151 | 53728 ~ 63274 (-) | True | G91752 |
| TU108859 | lncRNA | upstream | 38573 | 183534 ~ 183796 (-) | True | G91786 |
| TU108981 | lncRNA | upstream | 153586 | 298547 ~ 299097 (-) | True | G91873 |
| TU109450 | lncRNA | upstream | 248071 | 393032 ~ 395264 (-) | True | G92197 |
| XR_004578333.1 | lncRNA | upstream | 344601 | 489562 ~ 490796 (-) | True | LOC117597554 |
| TU109484 | lncRNA | upstream | 459089 | 604050 ~ 606076 (-) | True | G92220 |
| XM_026927617.2 | mRNA | downstream | 1910 | 140270 ~ 141515 (-) | True | LOC113534665 |
| XM_034305517.1 | mRNA | downstream | 6962 | 116563 ~ 136463 (-) | True | scg3 |
| XM_026927755.2 | mRNA | downstream | 7076 | 116563 ~ 136349 (-) | False | scg3 |
| XM_034305551.1 | mRNA | downstream | 83064 | 51413 ~ 60361 (-) | True | leo1 |
| XM_034305310.1 | mRNA | downstream | 123856 | 6409 ~ 19569 (-) | True | LOC113534766 |
| XM_034304930.1 | mRNA | upstream | 9106 | 154067 ~ 155144 (-) | True | LOC117597506 |
| XM_034305451.1 | mRNA | upstream | 32152 | 177113 ~ 177644 (-) | True | LOC117597586 |
| XM_026927244.2 | mRNA | upstream | 54012 | 198973 ~ 223384 (-) | True | tnfaip8l3 |
| XM_034305306.1 | mRNA | upstream | 93716 | 238677 ~ 247310 (-) | True | LOC113534440 |
| XM_034305313.1 | mRNA | upstream | 121246 | 266207 ~ 323940 (-) | True | dmxl2 |
| TU108961 | other | upstream | 157675 | 302636 ~ 323610 (-) | False | dmxl2 |
| TU109527 | other | upstream | 561789 | 706750 ~ 710654 (-) | True | G92240 |
| TU109528 | other | upstream | 562799 | 707760 ~ 747530 (-) | False | G92240 |
| XR_003402800.2 | other | upstream | 691533 | 836494 ~ 846935 (-) | False | slc27a2a |
| TU109708 | other | upstream | 837106 | 982067 ~ 989056 (-) | True | G92340 |
