RNA id: TU108859


Basic Information

Item Value
RNA id TU108859
length 263
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G91786
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 183534 ~ 183796 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTAGCGGGCCTTGGACCTCCCATCCATACAGAAGCTCAAATGGGGAAAAGCCCGTCGATGCTTGGGGTACCTCCCTGTAGGCGAACAGCAGAAATGGCAGCCACTTGTCCCAGTCCCTTCCAGTATCAGACACGAACTTGCGAAGCATGTTCTTTAGTGTTTGATTAAACCTTTCCACTAGTCCGTCAGTTTGTGGGTGATAAGGGCTGGTCTTGATTGCAGTAATTCCTAGCTGCCGATGTAAAAGCTTCATCAGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108826 lncRNA downstream 97989 84295 ~ 85545 (-) True G91764
TU108814 lncRNA downstream 120260 53728 ~ 63274 (-) True G91752
TU108981 lncRNA upstream 114751 298547 ~ 299097 (-) True G91873
TU109450 lncRNA upstream 209236 393032 ~ 395264 (-) True G92197
XR_004578333.1 lncRNA upstream 305766 489562 ~ 490796 (-) True LOC117597554
TU109484 lncRNA upstream 420254 604050 ~ 606076 (-) True G92220
TU109526 lncRNA upstream 522954 706750 ~ 708348 (-) False G92240
XM_034305451.1 mRNA downstream 5890 177113 ~ 177644 (-) True LOC117597586
XM_034304930.1 mRNA downstream 28390 154067 ~ 155144 (-) True LOC117597506
XM_026927607.1 mRNA downstream 38573 143593 ~ 144961 (-) False LOC113534658
XM_026927617.2 mRNA downstream 42019 140270 ~ 141515 (-) True LOC113534665
XM_034305517.1 mRNA downstream 47071 116563 ~ 136463 (-) True scg3
XM_026927244.2 mRNA upstream 15177 198973 ~ 223384 (-) True tnfaip8l3
XM_034305306.1 mRNA upstream 54881 238677 ~ 247310 (-) True LOC113534440
XM_034305313.1 mRNA upstream 82411 266207 ~ 323940 (-) True dmxl2
XM_034305286.1 mRNA upstream 339658 523454 ~ 660554 (-) False LOC113534387
XM_034305284.1 mRNA upstream 339658 523454 ~ 660547 (-) False LOC113534387
TU108836 other downstream 38573 143425 ~ 144961 (-) True LOC113534658
TU108961 other upstream 118840 302636 ~ 323610 (-) False dmxl2
TU109527 other upstream 522954 706750 ~ 710654 (-) True G92240
TU109528 other upstream 523964 707760 ~ 747530 (-) False G92240
XR_003402800.2 other upstream 652698 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 798271 982067 ~ 989056 (-) True G92340

Expression Profile