RNA id: XM_034305313.1


Basic Information

Item Value
RNA id XM_034305313.1
length 10004
RNA type mRNA
GC content 0.55
exon number 45
gene id dmxl2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 266207 ~ 323940 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCGCATGGGCGCGTGCGAGGAGGTTGTCGAGCTCGCGCACTTGCTCGCGTGCGCTGCCGCGCCGTGTTGTGCGTTGCGCTGTGTGTTGTATCGTATCGTGTCGTGTCGCGCGCGCAGCTGCGGCGGTGgaggtaatttttttattttattttttttaatccgaaTTAGCTTCTTAGCTAAATGACAACGACGCAGAAAACAAAAACGAAAACAATAGTGgcgttttaattaaaaaaaaaaaaaccgagGGGGGAAAACCGGGTCTGCGTCCATGTTTGGCGTCAGTTAGGATATTgacggttttttttttaagagaaagaGGCCAAGCGCgcgcacgagagagagagagagagagagagacggatggGATTCCCGGTTAGCTAATAGATGGAGACAGCGAAGCGTCGGCTCGGTGTTGTTTTTCATCGCtgtgaattattaaaataatcgtCGACGCGTCCTCAGAGACAGACCCACCGCCGCGATGCATCTCCACCAGGTGCTGACGGGAGCCGTGAATCCGGGAGACTGCTGCTACTCGGTGGGGAGCGTTAACGACATCCCGTTCACGgcgTACGGTTCGGGGTGTGATATCGTGATCTTGGCCAGTGATTTCGAGTGTGTGCAGATTATCCCTGGAGCTCAGCATGGGAACATCCAGGTGGGGTGTGTGGAGTGTTCACACCAACTGGGAcggATCGCTGCGTCGTATGGAAACACGGTGTGCATTTTCGAACCAATCTCCACCAACCTGAACAAGAGACACAAGCAACTGAATTACCAGTGGCAGAAGACTGGACAATTTTTACTCAATGCTATGACCTACAACCTGGCCTGGGACCCACAAGGAAATCGTATCCTGGCGGCAACGGAGTGGCTGCAGCTTTGGGCTCCGCCCACCGCAGATACACTGCAGGAGGAAGACgaagaagaaaaatcacacCCCGTCCTCAACgactggaagtgtgtgtggcAATGCAAgaCTGCTTCTGCTGTACGTATAATTAAATGGTCTCCTGATGGGGAATACTTCGCCACTGTGGGAAAGGACGACTGTCTGTTGAAGGTGTGGTACTCCACGCTGGGATGGAGGTCCGTGAtggtggatgtgtgtgagaggaagtCTGGCTCGCTCCACTTCTCTTTCATCTATCTGGCTCATCCCAGAACCGTCACGGGGTTCTCCTGGAGGAAGACCAGCAAATACATGGccaagggcTCGGTGTGTAGCGTCACACCTGAGCGCAGTGTGGATGGAATCACGtcgaTCCACCACCTGAAGCAGCTCAGACGGGGTCGGAGGAGATCGTCAGCTCTGGTCACACACACCGAGCTGCTGCCCAGCCAGTTGAACTCACACGACACACACCggcacatcacacaccacgGCAACGCGCTGTGTCACTTCCACATCTCAGCCAGCATTAATCCCaatacagatatCCCGGCGGCTCTGGCCGGGTCCGGTCTCTTCTCCTCAGGAGACAGTAATGGAGGTTTCGTGGTTCACTGGCTGAATAATAAGGATCTGAGCTTCACCTCCTCCATGGACGTTTTCATGCAGCACCTGAGGAAGTTCTCTGAGCAGAACCTCGAACACACCACTGATGACATCAAACAGGACGGAACTGCAAAATTTGACTTcgATCTGGATGAGATGTCAGACAAAGCATCAGAGCATGATGAAGGGGAGCAGGAGGGCAGTACGAAGGCGTCGTCTCCCGGCTCCAGCAGCAGTCTCCCTCCTCCGTCCGTCCTCCTGGAGCGCAAGCTGGAGTCCCTCACTCTGGAGTGGAACCGGAGCCCCGACATGCTCTTCACCATCCACCCGGTCGACGGATCCTTCCTCGTCTGGCACATCAAGTACCTGGACGAGTATATCCCCGGAATCTTCCGCCAGGTCCAGGTGGCGTTCTCCTCGCGGATCCCCGTAGCGTTCCCCACCGGCGATGCTAACTCTCTGAGTAAGAACATCATGATGTACGCTTGCACTTTCCCCGAGCGGGGCGGCGAGGTCTCTGTGGAGCTGGACAGGAAGTGCGCGTCTCTGGGCACCGTGATTGGCCCGGCCGTCATGATGGTGTCGAAGCACGTGGACGGCTCTCTGAATCAGTGGGCCGTGACGTTCGCAGAGAAGTCCGCTTTCTCCAACGTGCTCACGGTTTCGCACAAGTTCCGTTACTGCGGCCACCGTTTCCATCTCAACGACCTCGCGTGCCACACTGTCCTGCCCCTCCTACTGACCTCATCACATCACAATGCCGTTTTGACTCCGCCCTCTGGACAGGACGACCCACAGGGCGCTCCATCCCGCCCCCTGCGTCCATCCAGAGGCCTCACTCCGAAGGAGATGGGCAGCAACGCGGCGACTCGGACCTTCCATGACCCCAACGCCATTTACAGCGAGCTGATACTGTGGCGCGTCGACCACATCGGGCCGCTGTCCTGCACGGGGGGCGTGTCCGAAATCGCACGCATCAACTCCCTGCACACCGCCGCCTTCTCCAACGTCGCCTGGCTGCCCACGCTTATCCCCAGCTCTGTACTCGGAACATACTGTAACTCTGCAAGTGCATGTTTTGTGGCATCGGATGGGAAGAACCTGCGTCTCTATCAAGCCGTCGTGGATGCCAGGAAACTGCTGGACGAACTGTCCGACCCTGAGACCTctaaattaGTGGGTGAGGTCTTCAACATCGTGAGTCAGCAGTCCACTGCTCGGCCAGGCTGCATCATCGAACTGGACATAATTACTAACCagTGTGGCTCGAACACACAGCTGCTCCACGTCTTTCAGGAGGATTTTATCTTAGGATATAAACCTCACGATGACATCACCGACATAAACACTGCTGACTTCCCTTCAGCTGATGAGTTTCAGCCACCTCCATTTTCTGAGAAGTTTTTCTTGGTCGTGATCGAGAAAGACGAGAACAGAAACTCTGTGCTGCAGATGTGGCATCTTCATCTGAAATCTGTGCACGCGTGTGTGGATGACACTCCACGGGATCAGCCCTACCAGAACCAGCTGACGGTTCCACACATGCTCACTAACGCTGACTCGTCTCCTGAGTCGACACCGGGTCAGAGCCCTCTTCCTCGCTCGTCTTCCTCGGCTAACCTGCAGTCCGCCAGCAAACTGATCCTCAGCTCCACCCTCGTCTACAGCCACAGACTGGAGCTCCCCCTGGGGGTGGAGGTGATCCGCGCAACACCGTCTGCAGgtCACTTGAGCTCTTCCTCCATTTACCCGGTGTGTTTAGCTCCGTATCTGATCGTGACAGCATGTTCAGATGGAAGGGTTAGGTTTTGGAGATGTGGCGTGGATTCTGAAGATTCTCCCTCATACCGCTGGGAGCCGTGGTGCCTCCTGAACGAGGCGGAGGACAACAACAGCGCCCTGACCGTTTCAGGTCGCCCCGTCGCCGTCAGCTGCTCCTACACTGGCCGCCTCGCTGTTGCGTTCAAACAGTTAGTCCCTACTGAGCACAGCTCGAGCTCTAAAGACTTCTCCATGCATGTCTCCATCTTCGAGTGTGAATCCACAGGTGGGTCCGAGTGGGTTCTGGAGCAAACTATCCATCTGGATGACTTTGGGAAACCTGTCAGTGGTTTGGACCCCAGAATCAGCGTGGACAGCAACTTGGTGGTTTATAGCAAGTCTGATCTGTTTGTTAGAAAACAGAACCCTAATATTAAACACTTCGTTCACCTGGATTGGCTCTCGAAAGAAGACGGATCACACATCCTCACCGTCGGAGTGGGATCCAGCATTCTGATGTACGGACGGATCTCGGGCATCGTCGCCGAGCAAACCGGAGGGAAAGATGGCATGGCCGTCGTCACTCTGCCTCTAGGGGGCAGCGTTAAGCAGGGCGTCCGCTCTCGCTGGGTTCTGCTGCGCTCCGTCGATCTGGTTTCCTCCGTGGACGGGACGCCGTCTCTTCCCGTTTCTCTTTCTTGGGTCCGAGACGGAATCCTGGTGATCGGGATGGACTGCGAGATGCACGTCTACGCTCAGTGGTACCAGGATAAGAAGCCCAGCGACTCTGAGGACAACGATGAAGCTTTCATGGTGAAAAAAAGCGCAATTGAGATGACAGACGACGTGATCCGAGTTCCTGCCgtaatccaagatggcggactTTTTGAAGCGGCGCATTCGCTGTCCCCCACTCTTCCTCAGTACCACCCCACCCAGCTGTTAGAGCTGATGGATTTAGGGAAGGTGAGACGTGCGAAGGCCATCCTGTCTCACCTGGTCAAGTGTATCGCTGGCGAGGTTGCTGTGGTTAGAGACGCTGTGGCAGGAGAGGGCGGAGCCAGACGACACCTGTCTCGCACCATCAGCGTCACAGGAAGCACCGGCAAGGACACGATCGTCGCTGGGAGAGACGGTGGGCGCGATTACACGGAAATCAACTCCATCCCTCCTCTCCCGCTGTACGCCTTGCTCTCGGCCGACCTCGACACGTCTTACAGAAACAAATTAGCCGATGACGTCATATATCAGGAGCGGGAGACGCAGAAGTCCTCGGAGGATCAGTACGCTGAGCTCTTCCAGGACCCCACGGTAAACACTGATGACTTTGCGAGCTTCGCGTGGGCGGACAAGgcggagaagaaggagaagaagactCGTGTGATTGACCTGTCGCATTACGGCCCTACCTGTTTCGGACCTGAACATGCTCAGGTGCTCTCCTCTCACCTGATGCACTCCAGCCTGCCTGGACTCACCCGCCTCGAGCAGATGTTCCTGGTTGCGCTCGCTGATACCGTGGCAACCACCAGTGCCGAGGTGGGCAGAGCCACTGATAAACAGTACAGAGGTGGTGAGGCTCTGGATGAGTGCGGTCTCAGGTACCTGCTGGCGATGCGTTTACACACCTGTCTGCTTACATCACTTCCTCCTCTGTACCGCATGCAACTGCTGCACCAAGgtgtatcTACGTGTCACTTTGCATGGGCATTTCACTCCGAGGCTGAGGAGGAGATGTTGAACATGATCCCAGCCATGCAGAGAGGAGACCTGCAGTGGTCCGAGCTTCGCGCTGTCGGTGTCGGCTGGTGGATCCGAAACATCAACACACTCAGACGCATGGTGGAGAAGgTGGCCAAAGCAGCGTTTCAGAGGAATAACGACCCCCTCGATGCTGCGCTCTTCTACTTAGCCATGAAGAAGAAAGCTGTGCTCTGGGGCCTGTTCAGgTCTCAGCACGATGAGAAGATGACGCAGTTTTTCAGCCATAACTTCAGTGAGGATCGGTGGAGGAAGGCGGCGCTGAAGAACGCTTTCTCTCTGCTGGGGAAACAGCGGTTCGAGCAGTCAGCAGCCTTCTTCCTGCTCGCCGGGTCACTCAAAGACGCCATCgaggtgtgtttgGAGAAGATGGAGGACATTCAGCTGGCCATGATCATCGCTCGCCTGTACGAGGCCGACTTCGAGAGCTCGTCCACTTGTCAGGGAATCTTATACGAAAAGGTTCTGGGCTGCAAACGGGACGGAACCGAGTTCTCTTGCAGTAAAATGCACCCGGATCCGTTCCTCAGGAGCATCGCTTTCTGGATCATGAAGGATTACACGCGAGCGCTGGACACACTGCTGGAGCAGACGCCCAAAGAGGATGACGAGAATCCGGATGTGATGGTGAAGTCCTGCAACCCGATGGTGTTCAGTTTCTACAATTACTTGCGCACACACCCTCTGATCATACGCAGGCACTTCGCGTCTCCGGACGGCTCCGAGCGCAACAGCAGCGCCGATCAGATCAACCTGATCGAGCGCAAACTCTTCTTCACCACCGCTAACGCTCACTTCAAAGTGGGCTGCCCGGTCCTAGCGCTCGAGGTGCTGTCCAAAATTCCCAAAGTGACCAAGAAGACCTCCTCGCTCAGCAAGGGAGCTTCCACGGCTAACGTCAGCGACGTCCAGAACGGAGTCCGGGCCTCTGATCTGGACTGGAGTCAGCCGGTGAAGAAGAACGATGACGATGAGCTGAAGCTGGACTGGGGAGATGATGAGGacgaagaggaggaagaggaggaggaggataaGAAGGGTCTGATGATgaaggaggaaaagaaggaggaggaagaggaggaagaagaagaggagaagaaagcgAGTGATTGGAAGGTGGATGTGATCGCAGAGCAGCTGAAGTTCCGAGCATGTCTGAAGATCCTGATGACGGAGCTGCGCACGCTCGCCACCGGATACGAGGTGGACGGAGGAAAACTGCGCTTCCAGCTTTACAACTGGCTGGAGAAGGAGATCGAGGCCATGCACCGCATCTGCAACTACAAGGTGGAAGGCCAGGGTTCAGTGGGAGAGCTGGAGAAATGGAGCGGCAGCGTGTCTGCTGAAGCGGACGAGTGTGAGCGGAGGAGTGAGACGGATGTGTATGAGCGCCATCTGCAGGACCGGCGCAGACTGCAGGCCAAACAGCTGCACGCTGAGAGACGTAAAGCCTGGCTGAGGAAGAACGAGGCGCTGCTCAGAGTCTTCCTCACCTACTGCAGCCTGCACGGAGCCAAAGGGGGCGGAGTCACATCCGTACGCATGGAGCTGCTCTTCCTGCTGCAGGAGTCacagcagGAGACAACGGTGAAGCAGCTGCAGTCCCCGTTGCCGTTGGCAACAACGTTGCCGCTACTCTCAGCTAGCATCGCTCCGACTAAAACAGTCATTGCTAATCCTGTCATGCACCTGAACAACCACATCCAGGACATCCTGTACACTATAGTACAGACTGAGGCTCCGCCCCATCCTGACACACCTGATAAccgaGTGAATGCACTACACACTTTGGCTGCTTCTCTGTCTGCCTGCATTTACCAAGCACTGTGTGACAGCCACAGctacagCAGTCAGTCAGAGGCGAACCAGTTCACAGGGATGGTGTACCAGGGTCTGCTGCTCAGCGAGAGGCGGAGACTCAGGACGGAGAGCATAGAagaacaggccacgcccacctcCGCCCCTGCACACTggccaggcgtGGCGTCTCTGATTAGCCTGTTAGCGTGCTCTCAGGGTGAGGATCAGCCGAGGCTGAACGTGATGCTGTGTGAGGCCGTGGTGGCCGTGTATCTGAGCCTGCTGCTGCACGGCCTCGGCACACACTCCACCAACGAGCTGTTCCGCCTCGCCGCCCACCCGCTCAACGCACGCATGTGGGCTGCCGTCTTCGGGGGCGGAGCCAAGATCATCGTCAAGCCCAAGAGACTAGCCGAGGTCACGCCAGCCCCGCCCCCGACACCTCCAGCTGAGGAAGTGGACCGTCAGCGCAGACGGTTTAACATGCGTATGCTGGTTCCGGGTCGGCCCGTTAAAGagacacaggccacgccccctccgATCCCCACCGAACGTCCCGCCTACAAGGAGAAGTTCATCCCCCCGGAGCTCAGCATGTGGGATTATTTTGTGGCAAAAcCCTTCCTGCCTCTATCAGACAGTGGAGCTCTGTATGACTCTGATGAGAgtggtgatgaagatgaggaggatgatgacGATGCTTTCCTGTCTGATACTCAGATGACGGAACACAGCGACCCGAACTCAtacagTTGGTGTCTGATCCGCTTGGTGATGGTTAAACTCGCTCTGCACAACGTGAAGAACTTCCTCCCCATCGCAGGACTCGACtttacagacctGCCCGTGTCGTCTCCGCTCTGTAACTCTGtactgaagtgtatggagaATTGGGAGCAGCAGCTGCAGGAGAGGATGAACAGATTTGACGGTCCTCCACCCAACTACATAAACACCTTCCCTACAGACGGCAGTGTGGGTGGAGGCCCCGCCGTGCTGCGCCACAAAGCCATGCTGGAGCCTGACAACACGCCCttcaaggcGAAGCACCGCCTCTCCTTCCCCGCCCGCCGTCTTTGGCACTTCCTGGTGAAACAGGAAGTCCTCCAGGAGACTCTGATTCGGTACATCTTCACCAAGAAGAGGAAGCAGAGTGAGtgtTTAGAGAACCATGTggactgtcacacacacaactgtgtagCAGGAACTCACAAAATCAACAAGgtggaggCGGATCTTGGTTATCCTGGAGGCAAAGCTAAAATTATCCACAAGGAATCCGACATCATCATGGCTTTTGCTATCAATAAggcTAAATCCAGCGAGATCGTCCTGGCCTCAACTCATGATGTTCAGGAATTGGACGTTTCCACTCTGCTGGCTGCGCAGTCGTACACCTGGATCGGAGAGGACTTTGACAAAGAGTCACGcagctCGGATGATGACTATCGCTCCTCCCACACCAACATCGCACAggcaagctccgccccctttgCTCCTCCCCCAATGCCAGTCTCCGCCTCTATGCCATGGCTCGGCAGCGGACAAACTAGCATGGGCGCTAGCGTGATTGTGAAGAGGAACTTGAACAACGTGAAGAGAATGACCTCCCATCCCATTTACCAGTACTatatgaCAGGAGCTCAGGATGGCAGTGTGAGGATGTTTGAATGGAATCGCCCGCAGCAGCTCATCTGCTTCCGACAGGCAGGAAACGCCCGAGTCACACGACTCTATTTCAACTCACAGGGCAataagTGTGGAGTGGCAGATGGTGAGGGGTTTTTAAGCCTGTGGCAAGTGAATCAAACTTCATCAAACCCCAAACCATATTTGagtTGGCAGTGTCACAGTAAGGTGTGTGGTGATTTCTCTTTCATCACTTCCTCCAGTCTCATTGCTACAGCAGGACACTCCACTGACAGCAGgaatgtgtgtttgtgggacACTCTGATCTCCCCAAGTAACACCATGGTGCacgCGTTCACCTGTCATGAGAACGGAGCTACGGTTCTGCAGTACGCCCCCAAACAGCAGCTGATCATCTCCGGAGGGAGGAAAGGCTTCGTGTGTATCTTCGACATCCGTCAGAGGCAGCTGTTACACACCTTCCAGGCCCACGACTCGGCCATTAAAGCTTTAGCTCTGGACGCGAGTGAGGACTTCTTCATCACCGGCTCAGCCGAGGGAAACATGAAGGTTTGGAAGTTAGCGGGTCACGGGCTCATGCACTCGTTCAGCACCGAGCACGCCAAGCAGTCCATCTTCCGGAACATCGGCGCCGGCGTGATGCAGATCGAGACGTGTCCCGGTAACCGCATCTTCACCTGCGGCGCTGACGGGACGCTGAAGATGAGGGTTCTCCCCGATCGCTACAACACCCCGAGCAGCATCTTCGACATCCTCTAATCGAAAATAACGCAGAATTCAGACAGCCGAAGCGTCCTGCAGCAAGCCGGGTTCTTTCCTAACCTTACCGCGCTGCGAAGTgtcgtttttgtttttacttttcccCCTGAAGCGTGAGAGGTCACGACCTCACCCCTaatgaagccccgcccctttccccGAGCCGTTAGAGTGTTCTCATAGGAAAGCTATGCATGTGCTGAAGTCGTCACTGCGGTGCATTCGCCAGAGTGTTGATTgtgctctgtttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacacacgtGTGTCGTCATTTTCGTGCCCACAGCTGAGCGGTCTGAGCCTCTTTAACTCCAGCACTGTGCTTCAGTAACCCCCTGTCTGTGAACCCCacgctttatttattattattactgtaactcacacacctgtctcactctcgcCCCATGCCTGCAGCTGGACCTGTCTCACTCTAGATGTGTTTTAgaacgtatttatttatttatgtaaatgtacaagtttataagaggaataacacgtTTATTCTACACAGACTCCTGAAAACGGTTAGAGGAGGAGAAACATGTCGCACTGAAAAAgataaacctgtctcactctcctttCATACGTGCAATGAAATATCTCTCACTCATCTTTCATAACTCCATtacacctgtctcactctcttcccATAACTCATgataaacctgtctcactctcatccCATAACTCATgataaacctgtctcactctcatccCA

Function

GO: NA

KEGG:

id description
K24155 DMXL; DmX-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108859 lncRNA downstream 82411 183534 ~ 183796 (-) True G91786
TU108826 lncRNA downstream 180662 84295 ~ 85545 (-) True G91764
TU108814 lncRNA downstream 202933 53728 ~ 63274 (-) True G91752
TU109450 lncRNA upstream 69092 393032 ~ 395264 (-) True G92197
XR_004578333.1 lncRNA upstream 165622 489562 ~ 490796 (-) True LOC117597554
TU109484 lncRNA upstream 280110 604050 ~ 606076 (-) True G92220
TU109526 lncRNA upstream 382810 706750 ~ 708348 (-) False G92240
TU109536 lncRNA upstream 390880 714820 ~ 715497 (-) True G92247
XM_034305306.1 mRNA downstream 18897 238677 ~ 247310 (-) True LOC113534440
XM_026927244.2 mRNA downstream 42823 198973 ~ 223384 (-) True tnfaip8l3
XM_034305451.1 mRNA downstream 88563 177113 ~ 177644 (-) True LOC117597586
XM_034304930.1 mRNA downstream 111063 154067 ~ 155144 (-) True LOC117597506
XM_026927607.1 mRNA downstream 121246 143593 ~ 144961 (-) False LOC113534658
XM_034305286.1 mRNA upstream 199514 523454 ~ 660554 (-) False LOC113534387
XM_034305284.1 mRNA upstream 199514 523454 ~ 660547 (-) False LOC113534387
XM_034305287.1 mRNA upstream 199514 523454 ~ 660547 (-) False LOC113534387
XM_034305280.1 mRNA upstream 199514 523454 ~ 660546 (-) True LOC113534387
XM_034305291.1 mRNA upstream 199514 523454 ~ 660546 (-) False LOC113534387
TU108836 other downstream 121246 143425 ~ 144961 (-) True LOC113534658
TU109527 other upstream 382810 706750 ~ 710654 (-) True G92240
TU109528 other upstream 383820 707760 ~ 747530 (-) False G92240
XR_003402800.2 other upstream 512554 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 658127 982067 ~ 989056 (-) True G92340
TU109707 other upstream 659527 983467 ~ 989056 (-) False G92340

Expression Profile