RNA id: TU108981


Basic Information

Item Value
RNA id TU108981
length 228
lncRNA type intronic
GC content 0.44
exon number 2
gene id G91873
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 298547 ~ 299097 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCACACCACTGTCTAATGGACAAACTACCGTAAATACCGCAGTAGCACACCACTGTCTAATGGACAAACTACCGTAAATACTGCAGTAGCACACCACTGTCTAATGGACAAACTACCGTAAATACCGCAGTAGCACACCACTGTCTAATGGACAAACTACCGTAAATACTGCAGTAGCACACCACTGTCTAATGGACAAACTACCGTAAATACTGCAGTAGCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108859 lncRNA downstream 114751 183534 ~ 183796 (-) True G91786
TU108826 lncRNA downstream 213002 84295 ~ 85545 (-) True G91764
TU108814 lncRNA downstream 235273 53728 ~ 63274 (-) True G91752
TU109450 lncRNA upstream 93935 393032 ~ 395264 (-) True G92197
XR_004578333.1 lncRNA upstream 190465 489562 ~ 490796 (-) True LOC117597554
TU109484 lncRNA upstream 304953 604050 ~ 606076 (-) True G92220
TU109526 lncRNA upstream 407653 706750 ~ 708348 (-) False G92240
TU109536 lncRNA upstream 415723 714820 ~ 715497 (-) True G92247
XM_034305306.1 mRNA downstream 51237 238677 ~ 247310 (-) True LOC113534440
XM_026927244.2 mRNA downstream 75163 198973 ~ 223384 (-) True tnfaip8l3
XM_034305451.1 mRNA downstream 120903 177113 ~ 177644 (-) True LOC117597586
XM_034304930.1 mRNA downstream 143403 154067 ~ 155144 (-) True LOC117597506
XM_026927607.1 mRNA downstream 153586 143593 ~ 144961 (-) False LOC113534658
XM_034305286.1 mRNA upstream 224357 523454 ~ 660554 (-) False LOC113534387
XM_034305284.1 mRNA upstream 224357 523454 ~ 660547 (-) False LOC113534387
XM_034305287.1 mRNA upstream 224357 523454 ~ 660547 (-) False LOC113534387
XM_034305280.1 mRNA upstream 224357 523454 ~ 660546 (-) True LOC113534387
XM_034305291.1 mRNA upstream 224357 523454 ~ 660546 (-) False LOC113534387
TU108836 other downstream 153586 143425 ~ 144961 (-) True LOC113534658
TU108961 other upstream 3539 302636 ~ 323610 (-) False dmxl2
TU109527 other upstream 407653 706750 ~ 710654 (-) True G92240
TU109528 other upstream 408663 707760 ~ 747530 (-) False G92240
XR_003402800.2 other upstream 537397 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 682970 982067 ~ 989056 (-) True G92340

Expression Profile