RNA id: TU109484


Basic Information

Item Value
RNA id TU109484
length 455
lncRNA type intronic
GC content 0.40
exon number 4
gene id G92220
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 604050 ~ 606076 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaaagtaaactGCAGCAGAATAACAGACTCGCCGTTAATGCGGTGCTGCACAGGAACAGGAAGAAAGCTTCAAAGCGTGGTTGATCTCGCGCACTTTTCCCTGACATTGATGGTAATCACAAGAATCTCTTCTACAGCAGCACCACAGGCAACAATTATCTTTAACACAACTCGTATTTTTGTCGAAATCATTTTTGGACATGATGTAGCCTGCAAAAGATAACCAAAGGAAATAAACGGAGgtattaaaacatataatcacAATTACAGCAATAAGGTGCCTCTCTGGTagaaatacactgtatggccaaaagtatgtggacacctgaccatcacaccccacaaagttggaagcacacaatagtATAGAATGTACAGTCCTTCTTCTGTTGTCTCCCTGATTTCCTCTATTAATCATACTCATGTTTTTCATGGTTTCTTGATTAGTTGCTCT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process

KEGG:

id description
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578333.1 lncRNA downstream 113254 489562 ~ 490796 (-) True LOC117597554
TU109450 lncRNA downstream 208786 393032 ~ 395264 (-) True G92197
TU108981 lncRNA downstream 304953 298547 ~ 299097 (-) True G91873
TU108859 lncRNA downstream 420254 183534 ~ 183796 (-) True G91786
TU108826 lncRNA downstream 518505 84295 ~ 85545 (-) True G91764
TU109526 lncRNA upstream 100674 706750 ~ 708348 (-) False G92240
TU109536 lncRNA upstream 108744 714820 ~ 715497 (-) True G92247
TU109520 lncRNA upstream 125039 731115 ~ 732765 (-) True G92236
TU109525 lncRNA upstream 139451 745527 ~ 773557 (-) True G92239
TU109513 lncRNA upstream 176861 782937 ~ 786271 (-) False usp8
XM_034305313.1 mRNA downstream 280110 266207 ~ 323940 (-) True dmxl2
XM_034305306.1 mRNA downstream 356740 238677 ~ 247310 (-) True LOC113534440
XM_026927244.2 mRNA downstream 380666 198973 ~ 223384 (-) True tnfaip8l3
XM_034305451.1 mRNA downstream 426406 177113 ~ 177644 (-) True LOC117597586
XM_034304930.1 mRNA downstream 448906 154067 ~ 155144 (-) True LOC117597506
XM_034305206.1 mRNA upstream 89093 695169 ~ 699777 (-) True mibp2
XM_034305207.1 mRNA upstream 89093 695169 ~ 698557 (-) False mibp2
XM_034305179.1 mRNA upstream 176834 782910 ~ 802212 (-) True usp8
XM_026913982.2 mRNA upstream 229040 835116 ~ 846927 (-) True slc27a2a
XM_034305119.1 mRNA upstream 428873 1034949 ~ 1056267 (-) True LOC117597537
TU108961 other downstream 280440 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 459089 143425 ~ 144961 (-) True LOC113534658
TU109527 other upstream 100674 706750 ~ 710654 (-) True G92240
TU109528 other upstream 101684 707760 ~ 747530 (-) False G92240
XR_003402800.2 other upstream 230418 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 375991 982067 ~ 989056 (-) True G92340
TU109707 other upstream 377391 983467 ~ 989056 (-) False G92340

Expression Profile