RNA id: TU109520


Basic Information

Item Value
RNA id TU109520
length 1581
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G92236
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 731115 ~ 732765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGTTTGAGAGACGagatttaaattcatttaaaaaaatgttaaatgtcattctttaattaaaaaaaaaaccctgtaattgtaataattgtaattataaataaaagaggaatgaaacacgtttgggacgtgctgttgcaggaaaataatcaacttcatggtgatAACAGTGACGCGgctccatcacaccatcctgctgttgattattttcctgtaacagcatgacgcagagtgttttactccttatttAACACCTGGTTCAAAACACACAGCGTAATTATTACAGCAACTTCAGTGTCAGtcagcagttttatttttataacatgttcaaaagtttacatccctcCTGTTACCTGATTTGAATTTGTGCTTCGTTAAGGTGTTTAATCACATAAACCACTCGTTACACTCTTGAGCAGTCGAGTTAGAAAATaagaaatcagaaaataaaacagctcaGAAAGTATAAGATTTCTGACAATTCTGTGCTTTTATGATATTTATCCATGAAGAGCCTCATTACAGTGTGAATCGAACATCACCGCAAACTTATTACTGGCATCAAACGTTTGTTCGTCTTTAATTTAAGGCATGAAAAGAACCGATTAATGAAGATCTgattaaatacagaaacactgatatcattatttaaaaacaaacacacacaggccccGTTTTACGCCCCGCTTCAACACGTGACTGTGGTTAGACGTGGACGTCACACCTGTGCTAGCGTCTCACAGTGCTGAGCGCTAACCTGTGGGACAGGTAGAGCAGGAAGTCAGGTTATTGACCTGCTCATGATGTCACGCGTACAGAACGCTGCGCTAAAACACAGCCGTGTGTACGTTCACCACgtgttctgtttaatttacCCACACATCTTGAAGGAAAGGTTGATGTTCAGGATGTTTCTGACTCGTTTCCATGGTCACCGTGTCTTTACGCTGTCTGTAAAACACTTTGATCACGTGTCAGTGTGCGTTGTGGGCGGAGCCTGAGGCACTGAATaaggccttttttttaatagatattaatgttgtttattaaagaGAGAGCGTAAGACTGAATTGGTCCTGATACAGCCGATCACAGGGCTTAAAGtgctcaacacacactcacacacacactcacacacacactcacacacacactcacacacacactcacacacacacacacacacacacactcacactcacactcacacacacacacgtttaaatCCAGCCGATCAGCACTTCCTCACTGTGCTGGGATATTCAGCATCtccatctgagagagagagagagagagagagagagaaagtgaaagataaagagagaaagacagacggagagaaagtgaaaggaagagtgagaaagagagagagagagaaacagagagacagagagaaagggagagagagaaacagacagagaaacagagagagaaaaagagtgagagaaagtgagagataaagagagaaagacagagggagaaagagagaaacagagagagaacagagagtgagacacagaaagagagagagcgagagagagagagagagagagagagagagagagagagagagagacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109536 lncRNA downstream 15618 714820 ~ 715497 (-) True G92247
TU109526 lncRNA downstream 22767 706750 ~ 708348 (-) False G92240
TU109484 lncRNA downstream 125039 604050 ~ 606076 (-) True G92220
XR_004578333.1 lncRNA downstream 240319 489562 ~ 490796 (-) True LOC117597554
TU109450 lncRNA downstream 335851 393032 ~ 395264 (-) True G92197
TU109525 lncRNA upstream 12762 745527 ~ 773557 (-) True G92239
TU109513 lncRNA upstream 50172 782937 ~ 786271 (-) False usp8
TU109514 lncRNA upstream 50172 782937 ~ 786271 (-) False usp8
TU109515 lncRNA upstream 50172 782937 ~ 786271 (-) False usp8
TU109516 lncRNA upstream 50172 782937 ~ 786271 (-) False usp8
XM_034305206.1 mRNA downstream 31338 695169 ~ 699777 (-) True mibp2
XM_034305207.1 mRNA downstream 32558 695169 ~ 698557 (-) False mibp2
XM_034305285.1 mRNA downstream 70571 523454 ~ 660544 (-) False LOC113534387
XM_034305179.1 mRNA upstream 50145 782910 ~ 802212 (-) True usp8
XM_026913982.2 mRNA upstream 102351 835116 ~ 846927 (-) True slc27a2a
XM_034305119.1 mRNA upstream 302184 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA upstream 302184 1034949 ~ 1041417 (-) False LOC117597537
XM_034305122.1 mRNA upstream 323940 1056705 ~ 1074903 (-) True homer2
TU109527 other downstream 20461 706750 ~ 710654 (-) True G92240
TU108961 other downstream 407505 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 586154 143425 ~ 144961 (-) True LOC113534658
XR_003402800.2 other upstream 103729 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 249302 982067 ~ 989056 (-) True G92340
TU109707 other upstream 250702 983467 ~ 989056 (-) False G92340
TU109770 other upstream 489956 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 782973 1515738 ~ 1531062 (-) False LOC113525562

Expression Profile