RNA id: TU109527


Basic Information

Item Value
RNA id TU109527
length 1474
RNA type TUCP
GC content 0.54
exon number 4
gene id G92240
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 706750 ~ 747530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCCCTCAGACACCCTGTGTCGCTCCCTCCGTCACTCCCTCAGACACCCTGCGTCGATCCCTCCGTCACTCCCTTAGACATCCTCCGTCACTCCCTTAGACACCCTCCGTCGCTCCCTCAGACACCCTGCATCGCTCCCTCCGTCACTCCCTCAGACACCCTGCGTCACTCCCTCCGTCACTCCCTTAGACACCCTGCATCGTTCCCTCAGACACCCTGCGTCGCTCCCTCTGTCACTCCCTTAGACACCCTGCGTCGCTCCCTCTGTCACTCCCTTAGACACCCTGCGTCGCTCCCTCTGTCACTCCCTTAGACACCCTGCGTCGCTCCCTCCGACAGCCTCCATCACACCCTCCGTCACTCCCTCAGACACCCTGCGTCACTCCCTCCGTCACTCCCTTAGACACCCTGCATCGTTCCCTTAGACACCCTCCATCACACCCTCCGTCGCTCCCTCAGACACCCTCCATCACACCCTCCGTCGCTCCCTCAGACACCCTCCGTCGATCCCTCCGTCACTCCCTCAGACACCCTCCGTCGCTCCCTTAGACACTTCTTTGACACCCTTGGCCACTTTCGGGACACCACTAAACACTTCCTATTCTACATAACTTTCTCATTAGATGGTCCCTAGACACCCTTGTTCACTCTTGAGGGCACTCCCTAGATACCCTTAGTGTCTATCGATACTCCTCTCTATACGGCTCCCTACACACTCTTGGTCACCATctagatgtttttaaatgaaaacagaagTTCAGtctctattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactcaccgGATCACTGCGCGCTCTCCGGTGTGCCATTCCCATAACCGCCTTTAGATTTCATCTGTGCCTGCACCGAGTTCaccttcgCTGCGAGGCCCATCCCCATATCTCCTGATCCCACGTGTGTCATGTGTACAAAGTTGGTCGGCTCTCCGATCATCGAGCGATCGATTCGCCGTCtcctcttctacacacacacacacacacacacacacacgcataaacacgcacacactcctGTTCAGTTCTGTCCTCTTCATTGGGAGACGCACATCagatgtgttcagtgttcagtgtgtgtgttttttttgactCACTGGTTGAGGCTGTTCAGCGATACAGCAGCTAAAGCACACCCAGAACTCTGTcatctctcctcacacacacacacacacacacacacacacacacacacaacacacacttcctcccacacacagtctctctctccctctctctctgtgtctttctatgtctctcgctctctctgcacTTCCTGTTCAGTCTTCAGCTCTGCCACAAGTTTGTGCCGGAAGTTGGTGACGGGCGTTCCtcCTCGGACACTTCCTCGAAGTtgctgtcagaaaaaaaaaaatctgccttcAGATTTTCTCGCTGTTCTGCTCAATTCTGCAGATCTATACGTCATACATTCAGGAAACGAAGGCGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109484 lncRNA downstream 100674 604050 ~ 606076 (-) True G92220
XR_004578333.1 lncRNA downstream 215954 489562 ~ 490796 (-) True LOC117597554
TU109450 lncRNA downstream 311486 393032 ~ 395264 (-) True G92197
TU108981 lncRNA downstream 407653 298547 ~ 299097 (-) True G91873
TU108859 lncRNA downstream 522954 183534 ~ 183796 (-) True G91786
TU109536 lncRNA upstream 4166 714820 ~ 715497 (-) True G92247
TU109520 lncRNA upstream 20461 731115 ~ 732765 (-) True G92236
TU109525 lncRNA upstream 34873 745527 ~ 773557 (-) True G92239
TU109513 lncRNA upstream 72283 782937 ~ 786271 (-) False usp8
TU109514 lncRNA upstream 72283 782937 ~ 786271 (-) False usp8
XM_034305206.1 mRNA downstream 6973 695169 ~ 699777 (-) True mibp2
XM_034305207.1 mRNA downstream 8193 695169 ~ 698557 (-) False mibp2
XM_034305286.1 mRNA downstream 46196 523454 ~ 660554 (-) False LOC113534387
XM_034305284.1 mRNA downstream 46203 523454 ~ 660547 (-) False LOC113534387
XM_034305287.1 mRNA downstream 46203 523454 ~ 660547 (-) False LOC113534387
XM_034305179.1 mRNA upstream 72256 782910 ~ 802212 (-) True usp8
XM_026913982.2 mRNA upstream 124462 835116 ~ 846927 (-) True slc27a2a
XM_034305119.1 mRNA upstream 324295 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA upstream 324295 1034949 ~ 1041417 (-) False LOC117597537
XM_034305122.1 mRNA upstream 346051 1056705 ~ 1074903 (-) True homer2
TU108961 other downstream 383140 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 561789 143425 ~ 144961 (-) True LOC113534658
XR_003402800.2 other upstream 125840 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 271413 982067 ~ 989056 (-) True G92340
TU109707 other upstream 272813 983467 ~ 989056 (-) False G92340
TU109770 other upstream 512067 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 805084 1515738 ~ 1531062 (-) False LOC113525562

Expression Profile