RNA id: TU109602


Basic Information

Item Value
RNA id TU109602
length 2984
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G92282
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 931958 ~ 976549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATACTAGCGTGTGATGTAAGCACACACCTGATGTACAGGTACAGGGGTTCGAATGACTCTCTTCGCGAGGCCTGTTCGATGTAGCCCGAGCCCTTCCCGCGCAGGAAGACGCGCGCCCCGGTCTCCGTCTGGATGTGCTGCAGGTACGAGCCGCTCGGTCCCTCCACCTTCTCGTTCACGCTGAAGCCCGGCAGGCATTGCTCCAATCCTACAAATAGCTTAGTGTGCACAAAACTCTGCAACCAGCACCAGAGGTACAGTgattacacactacacccttAACCTACTAGagctctatacacacacacacacacacacacacacacacacacactgcactagcCCCACCCACTCCCAAAGCAAATAATCTAAATCAATTTTAGACATACTTCAATATTTCCAAGCTAGGTTTAACTCTGACGTAGATATTCAAGATTATTAAAAGTTATTTCCTCAGTCTCTTTACTCCTAGCTAGTTTTGCTAGCTAACAATTCCACTCACTCATAACTCCTTAAAGTTTCACAAGAAGTGAAAAAGGAAATTCAATCGTCGTTTTCAAGTTCAGATTTATTTCAAAAGCATGTTAAGAAGCATGTTAGCCTGACAACAGTACCACTCGggtaaaaggggaaaaagaaaacacagttcaCGGATGAAGATATCTCCGTGGAACTATTTAACCACATCTGCGTCTGATTGGGGGTTTAGTGGGAGAGTAACGATCGAGGGTTCGGAGTCAGCTACTGATCGAAAAGGTTTAAAGTTCACCTCGGTGTTCATAGTTGTCTCAGCCACAGCAAACAAACTAATGTTGCTATAGTCTTCAAAACAGCAGCACCCGGGCATGTTCTCCTGTCGTGATCAAtctgaacatgtgtgtgtatatgagtgtgtatgagtgtgtgtgtgtgtgtgtcaccttgTACTCAGAGGCCTTGATGGGGCAGTTCTGGGTGTTGTTGCCCTGCGGGGGGGAGTGTGGGGGGCAGTCCTCGGACTCTTTTCCACTGTGATACACCACCCGATCCGAGATATGGATGCTGGAAGCACAGCCCATGCTTCACTCCcgcttcttcttcctcttcttctcttcttcttctcgtcTCGTTATGTCCTCCAAGCCAGGACGCCTAGCTaggtctttctttttcactcagGTTCTCCAATCCTCCTTTCTTTGTCCAGACCAAACCGTATGTCCTTTTCTTAGGTCCTCATAGAAAGCCTCTATGATTTATAGCaagttctccaaaaaaaaaaaaagaccaggcacGTTATGTTCTCTAGTTTAAATCCTCCACGCAAGGCCTCTTAGATTCCCCAGTCGACTTCTTGATCTTCTCAATTCCTCCAATCCAAGCTGAGATACGTTCTCCTTTTGATTATCTTCTTCTTCCCTTTGACTTGAGTCCTTCAGATCAGGCCTGTTACGTTCTCCGCTTGTTCCTCTACTTCTTTTTTCCTTAAGTCCACTAAGAAGGCCCTTTTAGATACTCAGCATCTACAAAGTCCTACAAACAAGGCCAGGCACATTATGTTCTCTAGTTCTTCTCGTTGAGTTCTTCTCCTCCAACCCAGGCCTGGTCACGttctccacttttttttttttttttttttttttttaaacgtccACCTAGAAGACCCTTTAGATACTCCACATAAGTTCTCCAAACCAGGCCAGGAACATTACGTTCTCCACTTGattatcttcttcttctccttctctttttgtcCTTTATTTCCCTGTTtgaatgcattaataataataataataacgataataataataataataataaaaaatgatgatactaataataataataataataataacaataataataataataataatagtctatCTTCCTTTTCCCCCACCCCTGACCAGGAAACAGATTTCCTCTCGCGCTCAAACTCCATGGAgctccattttagatcaaaccCACTTCATTccacatcaccatcatcatcaccatcatcatcatcatcttcttcatcttcatcaccatcatcattatgatcatcatcatcatcatcatcatcatcaccactccGTCATTATGTCACTGTAACCTCTtttcaaaagaagaaaagaaaagaacagaagagaaagaaagaaagaaagaaatgtagtCTTGTAGTTAGTTCCAGGCCGGAGTTTGATCCATGTTTggccttgttttatttttttatgttttttttttttttttactccaccCTGAAATCTGGAGAGAGAAAATCAGCTTTTGGTGACGGAGGAGATCTTGTGCGCTTCACAGCGTTTCAACAGGCGAAAATATTCCCTCAGCATTACTGCGGCGGATTAATCCTGCGCCTTTCTGCACCCAAAAGGGACATTTTACACCCAAAAAAAGCGCAGTTTCCGAGGCGGTGTGCTCACGCGCTCGCATCCGAGATGGACACGAAGAAAAATCCGCGGtttcagagaagaaaaaaagaaagaaaagcgcTCAGCACAGAATCACACGGCCTCCGATTTCTCCTCTTTTAgaagcaaaaaaaggaaaagagatgtAGGCTAGAGGCTGTCAGATTGTCTGCGGGTAACCCGCTCAGGATCCGCgcgcaaaaaaaaacaaaaactgcgCCCTCGACTTCTCCGCTTCGACCCTGAGCGCGTCGGCGGAGCGGATCGGAGCCTGAAAGCGGCAGAAAAGCAGCGGAATAAATGGTGTTTTTCTGCTCCTCGTCTTTTCCAGTCCTTCAGCGCTGCTTGACAGCAGCAGATCCAATAAAAGCACGCGCGAGGATTGACCTACAGCCTCTACTGACGTCAATGCAAATGAGCCGCGCGCGGCCAATCACAGGCCAGCGCTGCCGGCCGGGGAGAAGCGCGCGCGCGGCGGCAGCTTTGAAACGCACACTTCGCTTTGATGTCATATTTATACAGgaaattattttagttttattctgtttaccaaatatatatatatatttttgcacttttatatctttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109667 lncRNA downstream 7839 887007 ~ 924119 (-) True G92309
TU109684 lncRNA downstream 17030 911310 ~ 914928 (-) True G92321
TU109673 lncRNA downstream 25216 896140 ~ 906742 (-) True G92312
TU109626 lncRNA downstream 40672 831382 ~ 891286 (-) True G92284
TU109630 lncRNA downstream 44956 865874 ~ 887002 (-) True G92285
TU109711 lncRNA upstream 10592 982501 ~ 984521 (-) True G92343
TU109728 lncRNA upstream 42538 1014447 ~ 1016182 (-) True G92359
TU109649 lncRNA upstream 177630 1149539 ~ 1216437 (-) True G92294
TU109581 lncRNA upstream 225250 1197159 ~ 1292493 (-) False bloc1s6
TU109792 lncRNA upstream 316792 1288701 ~ 1295898 (-) True G92412
XM_026913982.2 mRNA downstream 85031 835116 ~ 846927 (-) True slc27a2a
XM_034305179.1 mRNA downstream 129746 782910 ~ 802212 (-) True usp8
XM_034305206.1 mRNA downstream 232181 695169 ~ 699777 (-) True mibp2
XM_034305207.1 mRNA downstream 233401 695169 ~ 698557 (-) False mibp2
XM_034305279.1 mRNA downstream 271827 523454 ~ 660131 (-) False LOC113534387
XM_034305119.1 mRNA upstream 63040 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA upstream 63040 1034949 ~ 1041417 (-) False LOC117597537
XM_034305122.1 mRNA upstream 84796 1056705 ~ 1074903 (-) True homer2
XM_034305121.1 mRNA upstream 84796 1056705 ~ 1074009 (-) False homer2
XM_034305120.1 mRNA upstream 84796 1056705 ~ 1074007 (-) False homer2
XR_003402800.2 other downstream 85023 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 184428 707760 ~ 747530 (-) False G92240
TU109527 other downstream 221304 706750 ~ 710654 (-) True G92240
TU108961 other downstream 608348 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 786997 143425 ~ 144961 (-) True LOC113534658
TU109708 other upstream 10158 982067 ~ 989056 (-) True G92340
TU109707 other upstream 11558 983467 ~ 989056 (-) False G92340
TU109770 other upstream 250812 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 543829 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 655892 1627801 ~ 1644217 (-) False sema6dl

Expression Profile