RNA id: TU109626


Basic Information

Item Value
RNA id TU109626
length 4343
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G92284
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 831382 ~ 891286 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAAACACAATGGGAAATACCGAGGTCAGCAAAAATGGTCATGGTTCTATATATCGTACGATAAGTCGATAACGTAATTAAATtaaacgaaaaacaaaaaatttgttGGTTGCACAAGTATTCAACCTTGTAGCTCAACACCTGGTAGAACCTCCATGACTGCAGTTCCAGCTGCAGGTCTTCTGGGATGCGTATCTGTcggctttgcacatctggatcttCAGATTTTAGTCAATTTGGCAAAATTGCTCCGTTATGTCAGATTAGATGGAGACCGTTGCTGAACAGCAGCTTTCAAGTCTTGCTACAGATTCACAGTTGGATTGTGGTCTGGGATTTGACTGGGTGGTTCTGATCCATTCAGGTTCTTGGTGTTGAACCACTTCAGTATAGCTTTGGTCTGTTTTCTTCTTGattttctctccatcttgcCTTCAACCCAGGTCAGTTTCTCAATCCCTGCTAATGAAAAGCAttcccacaacatgatgctaccaccaccgtgtTTCACAGTAGGAACGGTGtgctcagggtgatgagcagtgttgagTTTCTGCCAAACATACCATTTTGTGCTGAGGCCaaactgttcagttttggttccatcagaccagagaaccatTTTCCACGTTTGCCGAGTCTCCGATGTCCCTTTCGTCAAACTCCATTTCGTATGACTTTTGTGATTGTCCTGTAAACATCTCCCATCTGCGCTGTCGATCTCTGCAGCTCCTTTAGGCTTCTCCTTGTCCTCTTGGTTGTGTCTCTGACTAATTCCCTCTTTCCCTGCTAACTGACTGTAAGGGGAAGGTCTCTTCTAGAAAGAGTCGTGTTTATATcgtattatttatattttttaataatttatttaataacaatatgtggggtgttcaaagtttgggataatttttttataaccaaacagCGAGTGATACTTTTCCAGAGCTTTGacctggacttgttttgattggtccttggtcttcatgatggtGTGTATTCTATGTTCAttaacaaactctgggttcttccaggaacaggtgtatttatcctgaggtcatgtgacactttaaatGCCAACCTGCAAACTCCAATCAattaattatgtgacttctgatggcagcTGGTTTGAGCAGAACTGATttagggggtgaatatttacgCATTTCATTTCAGACGGTTCATACTGGGAACCTCACTAAGATGTAGAAGACTAAACCCACTGAAAATGTGTGTCATGTTGATCAGTCCAATGATTTTCACGATACTTACcaagattttcaaacattttttgaaTGGTAGTCTCGTTGGCGTCCACCATGACGCGTTTCTCATCCAGCATCAGGACATTCATGGACAACCACTTGGAGGACATCCAGAGCGGGTGATCTATGACGAATCAAATCGTTACATTATACAGTTATGACATTATACAGTTACCTGAAGTTTTAAATGATGCGTCTGTCTAATTTTTGTTTgtgagatttattatttttaatgtaaacaggAATTTTATTCTCAGACTTTCAGACTTGAAGATATTAACACAGTTTATTAACTTTCACCGCTGTGTGAACATGAAACTCACCATCAGGAATTAAAGGTGTTGGTGGATGCACCACCGTCCAGCCGGCTTTCTTAAACATCTCAATCTGCACAGGGACACAAGACATCAGTCATTAATGGTAACTGTAGAGCAtctccatcacatcatcacgGTTTGCTATTGGTTCAGTTCCTAGCGCTTCTCATTTATGGGGCTTTCTGCTGTTGAATTTCCTTCGTTCCTCCAATTTCCATTTTCCTGCCTTTCTCAGTTTCCTAGTACCTGGTTTTTCTAGTTTCTGGTATTTTCTCAGTTTGATCTTCCTTGATTCCTGCGTTCCAGTTCCTTTATTCTTAATTTCCCCTTTTTCCGAGTTTGTAGTTTTCTTTGTTCTTAGTCTTCACGTTTGTGGTGTGGAGGTTTTTATTTCCCTCGTCTCTAGCATTCTTGTTTCCCTGTTCCCAACTTCCCtgcctttaatttaaaaaaaaaaaaaaaaaaaaaaacaatttttttttgaccttTTCTAAGATTCCACTTGCTTGTGTTTTAATCTTCTTGCCCTGTAGAAAAAACATCACCTTTCTAACATCTAAGCGTAGATCTTAGCCTTCTTTTGAAAAAGGAGCTTCTTCTTTATCTTGCCTCAGGATAGGCTACATATGTTTAAAAACCAGCACTGGTTCTAGTCAAGCTAGTAGGCAAGTACCTAGCATATTAGCTCAGTGAAATCAAAGAGGGTGTGGCACTCACCTGACGACATGGTCTGTCTGGATTGGACAGAACCAGTCCAGGTCCGATGATGTTAAAGGTGGCGTCAATGTGCATCGGGTTCGGATCCTTAAAGGAGATGATGTGCACCTTGTAGGTGGGAGCGAGGTGACGCCTCATCCACTCGATTCCCATAAAGTTAGTCACCTGTGAGCAGATGTGAACATTATTAGATCTTTATAGTCTGTTCTGTGAGAGATTAgaactttaaatataaataaaaactatacaGTTTGGAGACGTTATTAAGTAGTGAACACTACAGCGTACTTTCTTGTGGAGATTCACTGGGTTCGACATGAAGCCACATGGTTTCCACAAACATGACAGTAAAATAATTGTGGAGAAAACAGACGTCATGTGGAGACTTGGTGTGATTATAGCAGCTGGCGAAACATGCTACGTGATCAAGCTACAAATGAGGCATGCTCAAGCCAGTTCATTCCAAGATGGCTGACTTTGTAGAAATTACTTCTTCCTGTAGTTGTGGAAATTGTCACAACAAAAGATTTTAACAGCGCCACCTGCAGTGCTGGAGTCTGAGGTGGTCTCATCATCGCGTAACCTTCACAGACATCATCTCCACATGAAGTACGCAGAGGTGTTCAGAAGATTAATGACGCTAACActcaaaacaacacacacacacacacacacactcacacttcttcatgtgtgtgtatttgtcacCTGGCTCCGCTGTACAAACAGATCTGTTCCGGCTCGGATGAAATCAGCAGCGTCAAAACATGGCTCATGTTCAGTGGTGACAAACTTCCCCTCTGCAGCTAGCTTGTGTCTGTCCTCTACTGTACGGATCGGgtaatcctacacacacacacacacacacacactttcattacTACACAGGGAGTGTGAATTATAACAGTCGAGTGTGCAAGAGGAGAGTTAGCGCTATTAAATCATGCTACTGCCTGGTTGTTTCCTGATGCTCCACTCTGACTCCGCCCCCAATCCCCAAGAGCGCATAGGAGCAAGGTACGTTTCACATAAAGCTCTAGACagcaatatgcaaattatatgcaaattatataCAAAACTGACTTTCTGCGctcttcttttcattttttctatttttttatactaatgttactgtttttaatttaaacagatggatttttttttgggctGAAACTTCACACCTTAAGTGGATCTAATTTAAATCTGATATAAATATGTCTTTATTTACAGCTCCATGTTTACATGAATAATTCATACTCAAATGTAACCACCAGGTAGAAACAGACTGATTTATGAAACGAgagagactttaaaaaaaaaaaaaaaaaaaaaagaagtgtgtaagagagatggaaaaagagGGAGGGGTGATAAGCGAGAATGaccttcatttaaaacaaacacatttgtcCTGAATAGAAACCTGAACACGCTGgaatacacactaacacacttcaGAAAGTTTAAGAGGAAATAATaatctctcactctctacaGATACGCTCACTAACTCGCTAAAACACTAGCATGCTAACTGCCTGAAATGTTAAGTATATGATATGAGGATGTGATGTTGGGGCGTGGCGTGATGTCATTTTGGCGTGAACATCACGGATCAGCTACCAAACTAGCTGTGATTCTTGTAACTATAACAATCAACATTAAGAAGAtaatggaatttttaaaaaatggaccaGGAGTACTTAACCAAGGTAAGTGGATGATGTGTTCAAGTTACCACTGGAAcaaggtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacctgatCGTATAGCTCATCTGCCATGGTGGGTTTGGGTGCGGTGGTCCACTTTGCTCCTTGTTTAAAGTATTCTTTAATAAGCGGCCTGTAAGCACGATACTCGAAAAACCGAGCTCTCCACGCCATCGGAGCCTCGATGATCTCGTTCCCCACCACCAATAGGATGTCTCGCGGCATGGCTGCAtacatacctacacacacacacacacacacacacacacacacacacacacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109513 lncRNA downstream 45111 782937 ~ 786271 (-) False usp8
TU109514 lncRNA downstream 45111 782937 ~ 786271 (-) False usp8
TU109515 lncRNA downstream 45111 782937 ~ 786271 (-) False usp8
TU109516 lncRNA downstream 45111 782937 ~ 786271 (-) False usp8
TU109518 lncRNA downstream 45111 782937 ~ 786271 (-) False usp8
TU109673 lncRNA upstream 4854 896140 ~ 906742 (-) True G92312
TU109684 lncRNA upstream 20024 911310 ~ 914928 (-) True G92321
TU109602 lncRNA upstream 40672 931958 ~ 971909 (-) True G92282
TU109608 lncRNA upstream 43508 934794 ~ 971909 (-) False G92282
TU109603 lncRNA upstream 48266 939552 ~ 971909 (-) False G92282
XM_034305179.1 mRNA downstream 29170 782910 ~ 802212 (-) True usp8
XM_034305206.1 mRNA downstream 131605 695169 ~ 699777 (-) True mibp2
XM_034305207.1 mRNA downstream 132825 695169 ~ 698557 (-) False mibp2
XM_034305285.1 mRNA downstream 170838 523454 ~ 660544 (-) False LOC113534387
XM_034305119.1 mRNA upstream 143663 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA upstream 143663 1034949 ~ 1041417 (-) False LOC117597537
XM_034305122.1 mRNA upstream 165419 1056705 ~ 1074903 (-) True homer2
XM_034305121.1 mRNA upstream 165419 1056705 ~ 1074009 (-) False homer2
XM_034305120.1 mRNA upstream 165419 1056705 ~ 1074007 (-) False homer2
TU109528 other downstream 83852 707760 ~ 747530 (-) False G92240
TU109527 other downstream 120728 706750 ~ 710654 (-) True G92240
TU108961 other downstream 507772 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 686421 143425 ~ 144961 (-) True LOC113534658
TU109708 other upstream 90781 982067 ~ 989056 (-) True G92340
TU109707 other upstream 92181 983467 ~ 989056 (-) False G92340
TU109770 other upstream 331435 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 624452 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 736515 1627801 ~ 1644217 (-) False sema6dl

Expression Profile