RNA id: TU109630


Basic Information

Item Value
RNA id TU109630
length 2672
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G92285
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 865874 ~ 887002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAATAAATACAAACCAGACGCCGctgtgttacagtgtttagtgtttatagtTTACTGCAAAGAACAAACCTGGCTGTTAACAAagtgcatttaattttaaagtaaagtgcataaaattatgaaatgaaaagatttaACGAGGCTCTCGGGTCAGTTCCAGTGataattttcagtttttagtCATAAATTTTGTCTTCTgatgaaaatattctttaaattttgtcaatgttttgtcatatttattcattttaaaatcaactttACTCATTAAAATGGAATTCAATGTTAATCAACAGCATGTTAGTTgatgagaaaatgcaaaatttaatccatacattcacacattttatatataaacttaaACAATTTGCGTCATTGTGTGCAGAAGCGAGCTGCAATATAACGCTAACGTTGTGTATGTATCTGATTAAcctcgtgtgtgtgtaggacgcGTTTGCGTGAGTTAATTAACCCGCTAGTGAAGCGCTTCAGTTTCACGGTGTTCATTCGCTGTTCAGCTTCAGCGACTCGATCTCTCGATCTCCGACAAAATTCACTAGAACTGGATTCTCTCAAACGCTAGAACTTTTCTTTCTACATTTCTCCTCTTcagaaaacattgttagtgcgtCGTTAATATCTCGCGTGTCATTTTTTCAGCGGTacgttttaaataaaatcagtgctAGTGCTTGTTACGCATTTTAAATTTGTACTATGAACTCGTTCAATATATCGTACGATAAGTCGATAACGTAGTCACTCATGGATAAACGTTACTATGACAACTACTAGTAGGAAAATTTACATAGTACAGCGAACGTACAGTAACCGTTTGTTGGAACTGGCAGGTGACAGTTTGTGTTAGTTGTAGTTTGtgtcttgtgggcgtggccaaTTCATCTCTAAATGTTACTGAAATCGCGGCTCGGTGTTGCACACGTACGTAGAAAATCATCACTTTGTCGCTttctagtgtgaacgtaggTTTCTGTAGCTGAGAAGTAGGAAAAGTCTGTAACCTCGAACCCTTTTTAAGTGAatttttattaagtaattaactgtatatgtgtatagcTACTTATTATATTCTCAATTATTGTTAGCTTGCTAATACTATGCTAATTTATCTGGCTAGCGCTcattgtgtgttgttgttgttgttgttgttgagatATTTGTTTACACAATTAGAATTCAGTCACATCAATTTCAAatatctttttaatatttttcacatcATCATGCATCAAGTCTTAAGccataaacatgtttttttatccttttgttttttatatctatgtgtgtatatattaacccggctcacattcacacacctctctcacgTGAAAAGGCTCAGAGCAGCTAAAAATGTTCCCCCAAATAAACCGAATATAATAATTTTGCGTGAACACAGAAGAGCAGCGAAGCGGCACAGAGTCAGCTCTGCTATTGAAGGTGACAACACAGGCAGCAGGATGTCCAACCAGCACCTcttcagaaatacagaaatgatgGGTATCAAAATAAAAGTAGATGCTGGAAAATAAttctaagaaagaaaaaaaaaatctgtgtttaaCAATTTAacgtatataaaatatatttacattttttggtTGTGTGAGGATTCGAATTAATGCCTGTGATGACCAGCAGGGGgagacacacaccacagtgaTCATCCTCATCTGGCCCTCAGTAAGCGCCATCTCCTCCTGGTGACCACCGACTGTAAACtttacaactttttatttttaaaaaaatatcgtAAGAAAATTGAGTGTGTAATGAcctactacaaaaaaaaaaaaaaagtacaaaatttaTGATAGAATTAATcgtttaagaaagaaatgtattttcctGAATCGTAGAAAGGAGGTAGTAACTTTTgcgtatgtatatattttaaaatttcctGGCCATGTTTGTTGTCTTGGTGACGCTGAGAGCAGAACTTCCCTGGGCATTATGGGATGGCAGGGCGGACTTTCCTACAGTAGTTATGACTCCTTTGGGACTGCATACAATTTAACGATTCGATTTCCTCTTCACTAATTGAAAAACTTTCTGATTTCAGTTCTTAAGATTCGAGAGCGATTAGTGGTTGTGTTTTTGCACTTGGTTGGATCACTGATCTCCGGAAATCAAACGTCTTTGATTCAAACTCATTTTGGAGtggatttgtgtattttttgttttgcaaattttcaaaaaaaaaaaaaatcagttagcTGGAGCTTAAACAGTCCCATAAGCCAGAAATGCAGTCGTTATTGAGATCGTAAACGAGTGTCAGCTCTGTGTCTGCGGAAGCTCGGACATGCACGGcacagctaaaaataaaaaaaaattaattaaattaaaaaaattatttaaataaaaataattaagacTTATTAACTgttacagtcaggtctggagtTTTGAGTGAGCTACATAATGACAgaatcaataatataaaatcgAGACGTTGCATCACTTCtgttagagattttttttatatatatatatatattagtggaAATTTTTAGCTGTTGAACTGAtgagattaaaataataacaataataataataataataaaaacaataacaaaaacaccAGTCACTTTTCtgaatttatgtgtgtgtgagcagcatATTTATCTGTAATTAATACACTAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109514 lncRNA downstream 79603 782937 ~ 786271 (-) False usp8
TU109667 lncRNA upstream 5 887007 ~ 924119 (-) True G92309
TU109673 lncRNA upstream 9138 896140 ~ 906742 (-) True G92312
TU109684 lncRNA upstream 24308 911310 ~ 914928 (-) True G92321
TU109602 lncRNA upstream 44956 931958 ~ 971909 (-) True G92282
TU109608 lncRNA upstream 47792 934794 ~ 971909 (-) False G92282
XM_026913982.2 mRNA downstream 18947 835116 ~ 846927 (-) True slc27a2a
XM_034305179.1 mRNA downstream 63662 782910 ~ 802212 (-) True usp8
XM_034305206.1 mRNA downstream 166097 695169 ~ 699777 (-) True mibp2
XM_034305207.1 mRNA downstream 167317 695169 ~ 698557 (-) False mibp2
XM_034305289.1 mRNA downstream 205331 523454 ~ 660543 (-) False LOC113534387
XM_034305119.1 mRNA upstream 147947 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA upstream 147947 1034949 ~ 1041417 (-) False LOC117597537
XM_034305122.1 mRNA upstream 169703 1056705 ~ 1074903 (-) True homer2
XM_034305121.1 mRNA upstream 169703 1056705 ~ 1074009 (-) False homer2
XM_034305120.1 mRNA upstream 169703 1056705 ~ 1074007 (-) False homer2
XR_003402800.2 other downstream 18939 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 118344 707760 ~ 747530 (-) False G92240
TU109527 other downstream 155220 706750 ~ 710654 (-) True G92240
TU108961 other downstream 542264 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 720913 143425 ~ 144961 (-) True LOC113534658
TU109708 other upstream 95065 982067 ~ 989056 (-) True G92340
TU109707 other upstream 96465 983467 ~ 989056 (-) False G92340
TU109770 other upstream 335719 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 628736 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 740799 1627801 ~ 1644217 (-) False sema6dl

Expression Profile