RNA id: TU109649


Basic Information

Item Value
RNA id TU109649
length 1605
lncRNA type read_through
GC content 0.35
exon number 2
gene id G92294
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1149539 ~ 1216437 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcctcctcccaCCATCCCcaggtctacaagctcctcctcccaCCATCCCCAGGTCTACAAGCTCTGCCCTCtcacagagaaaaacagcaataaCACTTTAACCAGGGTTCATTAGAGTTCACATTCTGTTTAAGAGGAGGCCATTAGCgccatcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagagtgagTTTCTTGTGGACTTCAAAACAGGTTTATTTTAGAGAACGATCTGATCCACTCACACAGAGCGGAGTTTCACTCTTTAACATAAATACTGCAAACAAAAAGGATTAATTGCTGTTCAAGTTACTGGAATGTGCAAAACATCAGACatgaaaaattataaaataaaaaaaaattaactaaattaaaataaaaaaaaaaaaaacttaaaagcaaaaaaaccaTTTATAGGCATAGATTGTGTTTTTTGGCTGATATACAACAatcacaaaaacaacattattatgtctttctgaaaaaataaaatgaacaaaaatgaataaaaaatcaaactaaaataataaaaaggctTTTAGACCACGATGGTGTACAGGACTGTTTACTGTAAAGGCACGCTGCAGCCTCTTAATGCTCCGGTTTCTAAAagatttcatttcctgtaaCGTTCCAACAAAACTATTTAGCAACACGTCaggtgtaattaaaaaaataaaaataaaaaaaattaaaaaagaaaccgAGATTGTggtaaacatacagtataaacacagaACAACGTCTTCAACAGTGCATCGTCTGAGATCGCTCATCAATTAAAGGTTCAGGATGGAAAGGAATTTATAAATCTTACTGCACTTGTGGATCAGTTtgagttttttcccctcatccGACAATTTAATAATTAGCAAACGAGTTTAATCAGAGTGTTAgtgcaaagaagaaaaaaatccatctgtgctagaataaatgtgtttttaatcaaCTCAAATTAATTAGAACCCAAATCTGAAGCTTAAACGGTTGAGGTAAacaaagatttttaaattaaattaaaagtcattttaacCGAATCCTAGTCAGATTAGTTACGAGTTAAAGACGTGCAACAGATATGATAAACTGCTTAAGCCCTAATCCAGGATTTAGCACTGTCTCAGGATAACTTAATCCAGGATTTAGCACTGACTCACGATAACTTAATCCAGGATTTAGCACTGACTCAGGATAACTTAATCCAGGATTTAGCACTGTCTCAGGATAACTTAATCCAGGATTTAGCACTGACTCACGATAACTTAATCCAGGATTTAGCACTGACTCACGATAACTTAATCCAGGATTTAGCACTGACTCACGATAACTTAATCCAGGATTTAGCACTGATTTAGTGTGACTTAATCCAGGATTTAACACTGACTCAGGATAACTTAATCCAGActaaagataaagaaaatgtggagtgtttttatgaaatgaatgtaaataaaatgtcagtgttCAGGCTAGCAGTGGAGTTAGGATTTATTTAGcagagatttgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109728 lncRNA downstream 133357 1014447 ~ 1016182 (-) True G92359
TU109711 lncRNA downstream 165018 982501 ~ 984521 (-) True G92343
TU109605 lncRNA downstream 172990 970248 ~ 976549 (-) False G92282
TU109618 lncRNA downstream 172990 970248 ~ 976549 (-) False G92282
TU109617 lncRNA downstream 174101 970248 ~ 975438 (-) False G92282
TU109792 lncRNA upstream 72264 1288701 ~ 1295898 (-) True G92412
TU109844 lncRNA upstream 120454 1336891 ~ 1341381 (-) False G92421
TU109845 lncRNA upstream 120454 1336891 ~ 1341381 (-) False G92421
TU109847 lncRNA upstream 120454 1336891 ~ 1341381 (-) False G92421
TU109846 lncRNA upstream 123453 1339890 ~ 1341381 (-) False G92421
XM_034305472.1 mRNA downstream 33485 1103951 ~ 1116054 (-) False hdgfl3
XM_034305471.1 mRNA downstream 33485 1103951 ~ 1116054 (-) True hdgfl3
XM_026914301.2 mRNA downstream 64226 1082696 ~ 1085313 (-) True LOC113526880
XM_034305122.1 mRNA downstream 74636 1056705 ~ 1074903 (-) True homer2
XM_034305121.1 mRNA downstream 75530 1056705 ~ 1074009 (-) False homer2
XM_034305524.1 mRNA upstream 6465 1222902 ~ 1226351 (-) False c6h15orf48
XM_034305319.1 mRNA upstream 11170 1227607 ~ 1234626 (-) True spata5l1
XM_034305172.1 mRNA upstream 77615 1294052 ~ 1314655 (-) False LOC113526639
XM_034305171.1 mRNA upstream 77615 1294052 ~ 1314655 (-) True LOC113526639
XM_026911983.2 mRNA upstream 246306 1462743 ~ 1469671 (-) True dut
TU109708 other downstream 160483 982067 ~ 989056 (-) True G92340
TU109707 other downstream 160483 983467 ~ 989056 (-) False G92340
XR_003402800.2 other downstream 302604 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 402009 707760 ~ 747530 (-) False G92240
TU109527 other downstream 438885 706750 ~ 710654 (-) True G92240
TU109770 other upstream 6284 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 299301 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 411364 1627801 ~ 1644217 (-) False sema6dl
TU109968 other upstream 412192 1628629 ~ 1648286 (-) False sema6dl
TU109993 other upstream 551968 1768405 ~ 1768795 (-) True G92531

Expression Profile