RNA id: TU109673


Basic Information

Item Value
RNA id TU109673
length 510
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G92312
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 896140 ~ 906742 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTTGTATGTCAAGATCACGCGAAACAGTGCCCGGTGGGGCAAGTCGAGCTGGTTCAGGACAGTCTGGCTggtggaaatgtaattaagacGACAAACGGTACACCTGAGTGTCTCTGTCACCATCAGGTAATACCTGTCGATGTCCAGCACCCTGCGAGCCCTTTTATGGATGCCATAGCCAGTCAGCTGCTTCCCACAGACAGGACAAAACAGCCTGACCTTCCACAGGTGGTAGGGCATCCACACCAGGAGCCTGTGTGTGAAGAACCGGTCTGGTAATGGAGCCTGGTGGTAGATGAGGGAGGGGACTGGAGGCTCGTACCAGAGCTTCAAGCCTGACCGAAGTCTGCCACCGTGATAGAGTGTAGATGCAATCCACCGCTGATCTTGTAAGGGGATCGTCTTCCTCATTTCAGGTGGCAGAGAAGAAACGGACCCAGAACCATCatcaggagctggaggagcagAAGTCGGCACACCACTGGGAGCAGCAGAGGTGATCGGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109626 lncRNA downstream 4854 831382 ~ 891286 (-) True G92284
TU109630 lncRNA downstream 9138 865874 ~ 887002 (-) True G92285
TU109515 lncRNA downstream 109869 782937 ~ 786271 (-) False usp8
TU109684 lncRNA upstream 4568 911310 ~ 914928 (-) True G92321
TU109602 lncRNA upstream 25216 931958 ~ 971909 (-) True G92282
TU109608 lncRNA upstream 28052 934794 ~ 971909 (-) False G92282
TU109603 lncRNA upstream 32810 939552 ~ 971909 (-) False G92282
TU109610 lncRNA upstream 32810 939552 ~ 971909 (-) False G92282
XM_026913982.2 mRNA downstream 49213 835116 ~ 846927 (-) True slc27a2a
XM_034305179.1 mRNA downstream 93928 782910 ~ 802212 (-) True usp8
XM_034305206.1 mRNA downstream 196363 695169 ~ 699777 (-) True mibp2
XM_034305207.1 mRNA downstream 197583 695169 ~ 698557 (-) False mibp2
XM_034305279.1 mRNA downstream 236009 523454 ~ 660131 (-) False LOC113534387
XM_034305119.1 mRNA upstream 128207 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA upstream 128207 1034949 ~ 1041417 (-) False LOC117597537
XM_034305122.1 mRNA upstream 149963 1056705 ~ 1074903 (-) True homer2
XM_034305121.1 mRNA upstream 149963 1056705 ~ 1074009 (-) False homer2
XM_034305120.1 mRNA upstream 149963 1056705 ~ 1074007 (-) False homer2
XR_003402800.2 other downstream 49205 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 148610 707760 ~ 747530 (-) False G92240
TU109527 other downstream 185486 706750 ~ 710654 (-) True G92240
TU108961 other downstream 572530 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 751179 143425 ~ 144961 (-) True LOC113534658
TU109708 other upstream 75325 982067 ~ 989056 (-) True G92340
TU109707 other upstream 76725 983467 ~ 989056 (-) False G92340
TU109770 other upstream 315979 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 608996 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 721059 1627801 ~ 1644217 (-) False sema6dl

Expression Profile