Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU109703 |
| length | 680 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G92338 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 962489 ~ 963210 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109667 | lncRNA | downstream | 38370 | 887007 ~ 924119 (-) | True | G92309 |
| TU109684 | lncRNA | downstream | 47561 | 911310 ~ 914928 (-) | True | G92321 |
| TU109673 | lncRNA | downstream | 55747 | 896140 ~ 906742 (-) | True | G92312 |
| TU109626 | lncRNA | downstream | 71203 | 831382 ~ 891286 (-) | True | G92284 |
| TU109630 | lncRNA | downstream | 75487 | 865874 ~ 887002 (-) | True | G92285 |
| TU109605 | lncRNA | upstream | 7038 | 970248 ~ 976549 (-) | False | G92282 |
| TU109617 | lncRNA | upstream | 7038 | 970248 ~ 975438 (-) | False | G92282 |
| TU109618 | lncRNA | upstream | 7038 | 970248 ~ 976549 (-) | False | G92282 |
| TU109711 | lncRNA | upstream | 19291 | 982501 ~ 984521 (-) | True | G92343 |
| TU109728 | lncRNA | upstream | 51237 | 1014447 ~ 1016182 (-) | True | G92359 |
| XM_026913982.2 | mRNA | downstream | 115562 | 835116 ~ 846927 (-) | True | slc27a2a |
| XM_034305179.1 | mRNA | downstream | 160277 | 782910 ~ 802212 (-) | True | usp8 |
| XM_034305206.1 | mRNA | downstream | 262712 | 695169 ~ 699777 (-) | True | mibp2 |
| XM_034305207.1 | mRNA | downstream | 263932 | 695169 ~ 698557 (-) | False | mibp2 |
| XM_034305279.1 | mRNA | downstream | 302358 | 523454 ~ 660131 (-) | False | LOC113534387 |
| XM_034305119.1 | mRNA | upstream | 71739 | 1034949 ~ 1056267 (-) | True | LOC117597537 |
| XM_034305118.1 | mRNA | upstream | 71739 | 1034949 ~ 1041417 (-) | False | LOC117597537 |
| XM_034305122.1 | mRNA | upstream | 93495 | 1056705 ~ 1074903 (-) | True | homer2 |
| XM_034305121.1 | mRNA | upstream | 93495 | 1056705 ~ 1074009 (-) | False | homer2 |
| XM_034305120.1 | mRNA | upstream | 93495 | 1056705 ~ 1074007 (-) | False | homer2 |
| XR_003402800.2 | other | downstream | 115554 | 836494 ~ 846935 (-) | False | slc27a2a |
| TU109528 | other | downstream | 214959 | 707760 ~ 747530 (-) | False | G92240 |
| TU109527 | other | downstream | 251835 | 706750 ~ 710654 (-) | True | G92240 |
| TU108961 | other | downstream | 638879 | 302636 ~ 323610 (-) | False | dmxl2 |
| TU108836 | other | downstream | 817528 | 143425 ~ 144961 (-) | True | LOC113534658 |
| TU109708 | other | upstream | 18857 | 982067 ~ 989056 (-) | True | G92340 |
| TU109707 | other | upstream | 20257 | 983467 ~ 989056 (-) | False | G92340 |
| TU109770 | other | upstream | 259511 | 1222721 ~ 1226302 (-) | True | c6h15orf48 |
| TU109955 | other | upstream | 552528 | 1515738 ~ 1531062 (-) | False | LOC113525562 |
| TU109967 | other | upstream | 664591 | 1627801 ~ 1644217 (-) | False | sema6dl |
