RNA id: TU109792


Basic Information

Item Value
RNA id TU109792
length 435
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G92412
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1288701 ~ 1295898 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAATTCTATCATTTGCCATTCAACCAAACGAGGAAATGATTCAGCAATTTATAGAATAAGATtgaaaaagtaatttatttacatcGACAATGATTACAGAACAAATAGTGAGTCACTGATTCATAATCGAGTCATAttcatataaacacagtgaagtAATGAACAGACTCTGAGTCAACAGATTCAAGTCAGAGCTCAGATATGACAGTAACACTGCGTGAAGTTCTCAGAAAACGTTGCTTCATGTCCaagcaattgtgtgtgtgtgtgtgtgtgtgtgttgactctgTAAGGATTCATTTTCATCCTTTAATTGTGTACAGACATGCAATGTTTTGGAGCAACAGTGTACACACAGCTGATAATCATGGAGAGCTGAGCCTGGATTGCTTTAAagtccctgtgtgcgtgtgtgtgtgtgtgagtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109649 lncRNA downstream 72264 1149539 ~ 1216437 (-) True G92294
TU109728 lncRNA downstream 272519 1014447 ~ 1016182 (-) True G92359
TU109711 lncRNA downstream 304180 982501 ~ 984521 (-) True G92343
TU109605 lncRNA downstream 312152 970248 ~ 976549 (-) False G92282
TU109844 lncRNA upstream 40993 1336891 ~ 1341381 (-) False G92421
TU109845 lncRNA upstream 40993 1336891 ~ 1341381 (-) False G92421
TU109847 lncRNA upstream 40993 1336891 ~ 1341381 (-) False G92421
TU109846 lncRNA upstream 43992 1339890 ~ 1341381 (-) False G92421
TU109841 lncRNA upstream 44359 1340257 ~ 1341381 (-) True G92421
XM_034305319.1 mRNA downstream 54075 1227607 ~ 1234626 (-) True spata5l1
XM_034305524.1 mRNA downstream 62350 1222902 ~ 1226351 (-) False c6h15orf48
XM_034305212.1 mRNA downstream 86976 1197135 ~ 1201725 (-) False bloc1s6
XM_034305211.1 mRNA downstream 86978 1197135 ~ 1201723 (-) True bloc1s6
XM_034305508.1 mRNA downstream 138904 1125631 ~ 1149797 (-) True bnc1
XM_026911983.2 mRNA upstream 166845 1462743 ~ 1469671 (-) True dut
XM_026911985.2 mRNA upstream 166845 1462743 ~ 1469259 (-) False dut
XM_026911984.2 mRNA upstream 166845 1462743 ~ 1469223 (-) False dut
XM_034305386.1 mRNA upstream 183030 1478928 ~ 1492027 (-) True LOC113525461
XM_034305387.1 mRNA upstream 219906 1515804 ~ 1531051 (-) True LOC113525562
TU109770 other downstream 62399 1222721 ~ 1226302 (-) True c6h15orf48
TU109708 other downstream 299645 982067 ~ 989056 (-) True G92340
TU109707 other downstream 299645 983467 ~ 989056 (-) False G92340
XR_003402800.2 other downstream 441766 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 541171 707760 ~ 747530 (-) False G92240
TU109955 other upstream 219840 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 331903 1627801 ~ 1644217 (-) False sema6dl
TU109968 other upstream 332731 1628629 ~ 1648286 (-) False sema6dl
TU109993 other upstream 472507 1768405 ~ 1768795 (-) True G92531
TU110620 other upstream 1453490 2749388 ~ 2751169 (-) True G93046

Expression Profile