RNA id: TU109931


Basic Information

Item Value
RNA id TU109931
length 1224
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G92489
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1565080 ~ 1566502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGACCTCAGATCAGAATTTAACACAGCACACTGGACCTGAAAAACTGCAGTATGGAGATCtcctgatctcagatcagcatTAACATTAAAGATAACTGACCTCACATCAGCCTTAACACACAGTGACTGAACCTGGACATACAGGGCTCACACAGAAGACCTAAACCACTACAGATCACTGACCTCAGATCAGTGTTAATACACAACAGCTGAGACTCCTGAGAACACCTGTGCCTGTTtaactgatctcagatcagatcCTGTGGTTTATGCAGAATCAGCTTCAACACTGGActtaaaaacaacagatttatttctgtttgtacaGAATTACTGATCTCAGATCATTTATAACATTTCAGGGGTCATCTAGAACCTGACCTCAGATCAGTCTGAACACATTTACACTGCATCTGAAACAGGTTTATCCACAACACACCATGCTGCAGCACACTGAAGGTCAGAACTGTGCAGAATAACTGACCTCAGATCAGTgttcacaccacacactgctcctgagtcacacacacatcatcatcatcatcatcatcatcatcaccatcgtGTGTTTAATGCATTACTACTGACCTCAGATCAGCgttcacaccacacactgctcctgagtcacacacatcatcatcatcatcatcatcaccatcgtgtGTTTAATGCATTACTACTGACCTCAGAtcagctgacacacacactcgttcagCACTGGGAGGAGTTTTATCTTCTGAACATCTTCAACACTTTCTACTGTTTATTCActttataaacaataatttaatgCAAAAACACACCGTGTTACTCTGCTGGGAATCTTTATggattttgtgggttttttctttctttttttttacagactgaaaccacatgaaaaataaacattaaattaatgttCAGCAGTATGAGCTGCTCATGTGTTCAcatctgattatttatttatttgcctgcTTTAGAATCCCACGTGTGCTAATTTATGATTGTATTTTGGTCCACATTTCCTCGtcagtgtttctctctgcaGCCCGAGTGACTCTCCTGTTACCAGACGAGCTGCACAGCGCTCGAGTTCTCTTACAGAAACATGCGTTTACACTCAATCAGGAAAGAaatcaaacaaatacacaactgaagaaagaaagaacaaaaagaaagaacaaaataagtaaaaaggaaagaaggaaagaaaaaagaatataacaaaaaggaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109947 lncRNA downstream 5899 1544532 ~ 1559181 (-) True G92491
TU109945 lncRNA downstream 5899 1556623 ~ 1559181 (-) False G92491
TU109941 lncRNA downstream 13694 1544532 ~ 1551386 (-) False G92491
XR_004578312.1 lncRNA downstream 23868 1539030 ~ 1541212 (-) True LOC117597535
TU109928 lncRNA downstream 54716 1492294 ~ 1510364 (-) True G92488
TU109962 lncRNA upstream 30672 1597174 ~ 1648953 (-) True G92501
TU109954 lncRNA upstream 52114 1618616 ~ 1619113 (-) True G92494
TU109966 lncRNA upstream 57691 1624193 ~ 1624519 (-) True G92505
TU109972 lncRNA upstream 74187 1640689 ~ 1642945 (-) True G92510
TU109974 lncRNA upstream 94940 1661442 ~ 1661843 (-) True G92512
XM_034305387.1 mRNA downstream 34029 1515804 ~ 1531051 (-) True LOC113525562
XM_034305386.1 mRNA downstream 73053 1478928 ~ 1492027 (-) True LOC113525461
XM_026911983.2 mRNA downstream 95409 1462743 ~ 1469671 (-) True dut
XM_034305436.1 mRNA upstream 69 1566571 ~ 1586370 (-) True slc24a5
XM_034305322.1 mRNA upstream 45309 1611811 ~ 1643871 (-) True sema6dl
XM_026926963.2 mRNA upstream 298081 1864583 ~ 1876045 (-) True bcl2l10
XM_026926964.2 mRNA upstream 298081 1864583 ~ 1874623 (-) False bcl2l10
XM_034305329.1 mRNA upstream 315329 1881831 ~ 1904411 (-) True gnb5b
TU109955 other downstream 34018 1515738 ~ 1531062 (-) False LOC113525562
TU109770 other downstream 338778 1222721 ~ 1226302 (-) True c6h15orf48
TU109708 other downstream 576024 982067 ~ 989056 (-) True G92340
TU109707 other downstream 576024 983467 ~ 989056 (-) False G92340
XR_003402800.2 other downstream 718145 836494 ~ 846935 (-) False slc27a2a
TU109967 other upstream 61299 1627801 ~ 1644217 (-) False sema6dl
TU109968 other upstream 62127 1628629 ~ 1648286 (-) False sema6dl
TU109993 other upstream 201903 1768405 ~ 1768795 (-) True G92531
TU110620 other upstream 1182886 2749388 ~ 2751169 (-) True G93046
TU110621 other upstream 1193110 2759612 ~ 2768298 (-) True G93047

Expression Profile