Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU110078 |
| length | 505 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC117597531 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 1876965 ~ 1880573 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU110073 | lncRNA | downstream | 14595 | 1861949 ~ 1862414 (-) | True | G92592 |
| TU110057 | lncRNA | downstream | 17138 | 1859594 ~ 1859871 (-) | True | G92576 |
| TU110041 | lncRNA | downstream | 35787 | 1840259 ~ 1841222 (-) | True | G92560 |
| TU110013 | lncRNA | downstream | 73206 | 1803578 ~ 1803803 (-) | True | G92540 |
| TU109987 | lncRNA | downstream | 180565 | 1696179 ~ 1696444 (-) | True | G92525 |
| TU110241 | lncRNA | upstream | 114458 | 1995031 ~ 1996621 (-) | False | LOC113534649 |
| TU110246 | lncRNA | upstream | 116107 | 1996680 ~ 1999302 (-) | False | LOC113534649 |
| TU110234 | lncRNA | upstream | 155368 | 2035941 ~ 2130790 (-) | False | fam214a |
| TU110272 | lncRNA | upstream | 216013 | 2096586 ~ 2098273 (-) | False | onecut1 |
| XR_004578342.1 | lncRNA | upstream | 291301 | 2171874 ~ 2173454 (-) | True | LOC117597579 |
| XM_026926963.2 | mRNA | downstream | 964 | 1864583 ~ 1876045 (-) | True | bcl2l10 |
| XM_026926964.2 | mRNA | downstream | 2386 | 1864583 ~ 1874623 (-) | False | bcl2l10 |
| XM_034305322.1 | mRNA | downstream | 233138 | 1611811 ~ 1643871 (-) | True | sema6dl |
| XM_034305436.1 | mRNA | downstream | 290639 | 1566571 ~ 1586370 (-) | True | slc24a5 |
| XM_034305387.1 | mRNA | downstream | 345958 | 1515804 ~ 1531051 (-) | True | LOC113525562 |
| XM_034305329.1 | mRNA | upstream | 1258 | 1881831 ~ 1904411 (-) | True | gnb5b |
| XM_034305210.1 | mRNA | upstream | 25945 | 1906518 ~ 1984333 (-) | True | myo5aa |
| XM_026926935.2 | mRNA | upstream | 106800 | 1987373 ~ 1992487 (-) | True | arpp19a |
| XM_034305080.1 | mRNA | upstream | 116093 | 1996666 ~ 2014965 (-) | True | LOC113534649 |
| XM_026927595.2 | mRNA | upstream | 139284 | 2019857 ~ 2033455 (-) | True | LOC113534648 |
| TU109993 | other | downstream | 108214 | 1768405 ~ 1768795 (-) | True | G92531 |
| TU109968 | other | downstream | 228723 | 1628629 ~ 1648286 (-) | False | sema6dl |
| TU109967 | other | downstream | 232792 | 1627801 ~ 1644217 (-) | False | sema6dl |
| TU109955 | other | downstream | 345947 | 1515738 ~ 1531062 (-) | False | LOC113525562 |
| TU109770 | other | downstream | 650707 | 1222721 ~ 1226302 (-) | True | c6h15orf48 |
| TU110620 | other | upstream | 868815 | 2749388 ~ 2751169 (-) | True | G93046 |
| TU110621 | other | upstream | 879039 | 2759612 ~ 2768298 (-) | True | G93047 |
| XR_004578380.1 | other | upstream | 1548455 | 3429028 ~ 3531691 (-) | False | kcnab1a |
| TU111361 | other | upstream | 2292715 | 4173288 ~ 4173594 (-) | True | G93711 |
| XR_004578382.1 | other | upstream | 2611973 | 4492546 ~ 4492739 (-) | True | LOC117597618 |
