RNA id: XM_026927796.2


Basic Information

Item Value
RNA id XM_026927796.2
length 9208
RNA type mRNA
GC content 0.44
exon number 3
gene id onecut1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2091734 ~ 2109935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaaagaaacacaagaGGAGCAGCGGCGGCAGCAGCAGGCATGGAGAGCCCCGACACCGCCACGGCCCAGCGCGCGCTGCCACACAGACCGGGGCCTTAATCTCACGCGCCTTCACTTCAGTTattcctcttctttctctctgttttatttttttgtttgtttgttttttgttgttgtttttttgcgaACCAAAGCGactggataaatttgaaaaaaaaatttttttcgttaatatttttaatcatgctGGATGCTGGagaatcttttgtttttctttttccttcttcttcttcttcttcttctttaaaaagCCAAACCAAAGCGATCggaaaataaatcactaaaaaAAAGGGGACACTCTTTATTATCTGAAATAAAAAGGAACTTAAtaatactattttttaaataataataataataataataaagtcgAGAGAAGGAAGCTACACGGGATAAGGAGGCGAAGGAGGAGAAACTTTTACGCACGTGAGGAACTTTTGACTCTCTGGCGAGCAGATAGATGATTTGTCCACGAGCTCTCGCGCACGATGAACGCGCAGCTGTCGATGGAGAGCCTGGGCGATCTGCACGGCGCGAGCCATGAgccggcggcggcggcggcccACGCGCGCTCCGCGGTGGGCATGGCGTCAATCCTAGAGAGCGGCGACTATCCTCATCCTGCTCATCCGcaccatcctcatcctcatcatccgcACGCTCATCCGCATCATCATCAGCACCGCCCCCCGGAGCACGCGGGCCTCGCGGGCCACCTGCACGCGGCGATGAGCGGCGCCATGGCGTGCGAGGCGACCGCCGGTATGGGCATGAGCGGCACGTACACCACGCTCACGCCGCTGCAGCCTTTACCTCCCATCTCCACCGTGTCCGACAAGtttcctcatcatcctcatcctcacgCTCATCCTCACCAGAGGATCGCGGGGAACGTCAGCGGGAGCTTCACGCTCATGCGGGACGAGCGCGCGCTGGCCTCCGTCAACAACCTCTACGCGCCCTACCACAAGGACGTGGCGAGCATGGGCGCCATCCACggctcccagcatgcactgccccgccgccgccgccgccgccgcccgccttACGCCCACGAGAAGATGCTCGCGCCCGCCGGATTCGACTCCCATCACCCCGCCATGCACGCGAGCAGCGTCACCTCGTCCACCTCGTCTTCATCCtcgtcctcgtcctcctccCCGGCGACCGGCATGATGGTGCAAATCAACGGCatccatcaccaccaccaccaccaccagcaccagcaccaccatCACCCCCATCACCCGCACGCGCACCTGAGCGCGCAGGggcaccaccatcaccaccaccaccaccacgcgCAGGGAGCACTCGGAGCCGCGCGGGACCGGGAGCACGCGGCGCCCGTGGAGgaggtgaacaccaaggaggTGGCGCAGAGGATCACCACCGAGCTGAAGCGCTACAGCATCCCGCAGGCCATCTTCGCTCAGCGCGTGCTGTGCCGCTCGCAGGGAACGCTCTCCGACCTGCTGCGGAACCCCAAACCCTGGAGCAAGCTCAAGTCCGGCCGCGAGACCTTCCGCCGCATGTGGAAGTGGCTGCAGGAGCCCGAGTTCCAGAGGATGTCCGCGCTGCGCCTCGCAGCGTGCAAAAGGAAGGAGCAGGAACACGGGAAAAACGAGCGCGGAACCGCCTCGAAGAAACCGCGACTCGTGTTCACCGACGTCCAGCGTCGGACTTTACATGCAATATTCAAAGAGAACAAGCGCCCGTCCAAAGAGTTACAAATCACCATCTCTCAGCAGCTGGGCCTGGAGCTCGCCACCGTCAGCAACTTCTTCATGAACGCTCGCCGGCGGAGTCTCGATAAGTGGCTGGACGATGGAGGCTCCAACTCGGCCAACTCGTCCTCCAGCACTTGTACCAAAGCGTAACAGCTGCAGACTGACCCAAAAAACCTTCGGTGGAAAAGCTTTAACCTAAAAAAACTAAGCCAGAGAACTTCTGGACAGCGTTTTTTTGCCCTTAAGACTTGTACAATACTGATATTTATAATATccaaagaaaaaacaaccaaacaaccaaagacttcttcttctccttcttcttcttctatttcttcttcttcttcagcgAGTATTTAAGACTTCATTCGTTTATGTCTGCAAAAAAGAAGTGTTACTGTCAGATCATTGGTCATACAAACACCTATCACCAGTTTCCCACACTCACACCTCTCATTCTCGATCCTCGTGATTGGTTGGACTCTTTCTCATCACTGATTGGACGCTGACTCCGCCTTGGAGttgttgtattgttttttttttgtttgttttttgtttttgttgggaTTATTTAGCACGATTTGAGGCGTGTGACATCTCACGAGTTTAAGCACTGTGTCCAAACGGAGACGAGCAcaggtgtgatgatgatgatgtcactcaTGTGCTTCGAGCCCCGCCCCTTTTCACCCACCTTCACCCCTCCTTCCCCCATTcctgaaaaaaacaattctCCAGGGTTCGAGGATTAAAAACATGAAGCTGTAGCATCTTACCACGGTTTTCCTCGAATGCCGTCCTCCTCGTAGTGCTTTCTTCCTAACTGTCAGGAAAATTAGGATGCGTTTCGTTCATCATCTGTAACCATTTCACTTTTACGTGCAGAAATCAATCAAGTATGGAACcaaagaagtgtgtgttaaagagacTGCTCCAAATTTCTACACTCTAATCAAAAACAATTTGGTAGAAACTTAAATCATTGTGCTTAAATCATTCACACTTTGTCCAATCGCTCTACGCTTTGTGGCGTGATACGTTCAGGGAAAACTTCACTAGCTTTAAAATACTTTGCTCAatctatgttttaaaaaaataataaacgcCAGCAGCTAAACACCAAAGATCGACCCTCATCGGGCAGCTTCAGCACCTGTGCTGGAAAAACGTAATCGACCAATCATAAGCATGTAAGCCTGAGAGGGACGCTACTCCGCCGACGGTTAACCACGCCCATAAGCAGGGACTGACAGCGGACTGTAAATAAGCACCTACGTTAAATCACGATGTAAAGCTGCCAGGATTAGCCGTGCTTTTACTCGGCTAACGTCGTCACTGGAGTCCACAATTTCCAAAATTTCAAGGTTACACTTTTGATTTTGGCGTCACATGGTACCGGAAAGTTTATGTGCATTATTCATTAGCAACAAACTCCATCGACACACAGTGAAAGTCTGGTGCTTAACGGTAGTTATGCTTTATTTTAACAACAATCTGGggccaaaaaaaaggtgcatgaaatatgtaacatttttaatttcacaatgaATAAAAAGGTAACGAACAAATAGAGACTGTGTGAATTCACAGTTTATGGTTTAGCCATAAGGTGAGAGCAGAAATCTACACTTTTAGAccaaaaagttaataaaattcTCCTGgcctaaaaagaaaaacaatgcacTGAAGAATTCACTTCTGGTAGCAGTTACTTTCACTTTGTGATGACTTTCTCTTTAGTTTTTGACGTGTGAATTCGCAAACCTTTATCTTGTGCGCCAATAGAAACCCAGTGGGCGGAGCTTTTTATCATTTCCACTGTTAGCTTGGAGGCGTCTCGTCCACAGAAATACACTCCGAGTTTTTATGGAAaacttctgttttttctctccgCCTGCTAGGACTTTCTCCATTCAGGTTTCAGACTGATAAACATGAAGCTGTGTTAGCTTTACTAGCATAATGTTGAAGGATCTGCAACACTTTTGTAGTGAAAAGAACTTCAGCCCAATTTTTTTGCCCCAGAGtgcaagtgtatgtgtgtgttgttattctCATTATATCCACTAGGGGGCAGGAGGGAGCTGAAACATCCCTGGCTGGAAGAATATCCTATAAAATGTCGACCTGTTAGCAGCGTTGCTGGTGTCGTGAACTGTCCACTCGTAGGATACTACCTCCTTGAGGAATTtttaagaacacacacacacacatacacaaacttaAAATAGAGTGTAATGTCCTGTTATCGCAGCATCTGATTCAAACCTACTAACCCCTGGCTTATGGTTTTTGATTAGCTGAATAATTCTATGCATGACCTGGTTTGGAAGAAAGCACTACGAGCTTTGCGTTCCTCCTCGAGGAAGCGGTTGCATTCGGTCCACTCCAACAGTCACGAGATTTCTGGCCTGGCTGTTCCTGGTCActtgtggtgtggtgtggttagctttaccaaaaaaatgttatatctATATATTCGGTATCTATTTATGAGTATTCCATTTGATGACCAGAAGAGAACGCTGCTTCCTCGTGtagaaaagacagaaatatcTTCAGACCTGCTTATATTTTTAGTGCGAACCAAAGATGCTACCTCACTCAGTTTCCATTAGTGATTTCTATCACGTTAATGATACCAAAGAATACCaaagatgtttctttttttttctgtttttttcctctcttttgcACGGCCTACGTGAATGATGTGGTGGATAAAATGGACGGTGTGATGATCGCCCagccttcctttcctttccttccctctctctccctctctttcttccttccttcactcCGCGTGCTCTCTTTTTCATCCGTGCTCGTGCgactttgataaaaaaaaaaaactcacaggaCGAGTGCCTTGCTTGAACCAAAGTGTTAAACCGCCGTTAacctctcaatctctctctctctctctctctttctctttcttcttgtACTCTTAAAATACCTCAGCCTCTAGAAGGGCCACTGATGAAGAttaacagtctctctctctctctctctctctctctctctcactgtggtGCTTTTCACCAGTGCAGCCATGCAACAAAAACATACCTTTTCCCTTTCTCCAACTCTTTTGCTGATAAACCAAAGCTCCTCCTCTTCCCCTATTAAGCCCTTCCCCAACACTAATCAACCactagccccgccccctttttgCTGGTAGGCGTGTCCACCGTACCGGGCCGTGTACGTGTTTTTACCAAATGTCTCAGAATACCTCATACTAATAAAAGCTTACAGTGGTGTTGTATAGAGAGTCTATGTGTTTGAGGCAGAAACTCGATTATTTTGCGAACTTGTTCATGTTGATTCgtaaaaatatctttatttatttttgacgTTTGGCTTAAAAAGTGCTGTGTTCTTTCGCTCACTGATGGCAAGTTTCAAAACTTGcaggaaggaaaagagaaacGTATTTTTTGATTAAAAGTTGTGTTATGCTATGTGCGATACGGTTACGATAACGTTAACGATAacgataatgataatgataatgtagGCTGTTCTTTTTTACAGGGTAAAAAAACCAACTGCTGTGATGCCgtgtttatatgtgtttatatattttcctcttttctcagttgTGTGATttcgtttcatttcattttgtaccattttgagtctgttttaatttatgtatttgtagAAAATATAGATTTGTACATAGTAGggttttttggaaaaaaaaaaaaaaaaaacaaacaaaacaaaaccagaaaaaagGGGACGTTCGGTTTTACGTTCTGGCCTTCTGATGGAAGCGTGGACGCGGCGCAGGCGTGCGATCTTTTATGTCTCGGCTGGCACACGGTTCTGCAATCAAAACACTGCCAGAAACACATCACCttcagacgcacacacacacacacacacacacacacacatgccctgGGAAAGATTTCTGtctgtcactgaaatcacacaaACTGTCTGTGATGTtttcatttccttcatttttttgtcctttattCACGCTGCACATATGGAAGCTTTACATTTAGATCTCACTAGCcattttattgtgtgtgaaggtgtgtgtgtgtgtgtgtgtgtgggtttgtgtagAAGTGGTGGTGGGAACGTACAATCTGAGAGGGCGGGGCTTAGACAACAAAGTAGGGAGGAGCCATGGATTTGATTGACAGTTTCATCCAGTATTCTGTACTAACCACAATGCGCAATATGTCTAGTATTAAAGCGTCAACACAACTGGacttacaaactgcacctttaagattATAAGTTTTAGCGCCCTCTTCAGCCTGCGAGGCGAAGCGCAACTGCAATGACAAGATTTATGGACGCCGTCCATTTGTTGAATCTACATTTGCATATTGAGTTCTGTTCCagctgggggcggagctaatgtCAGGACCAGAAAAATGTTATCAAAAtcttgtaacaaaaaaaaaccaagaaatTTCAAAACGATTATATCACAAGTCCAGCACCTCAGTTTATTCCTGTGGTATTATTACATACATCAGTTTTCCGTCAGAAGTCATCGTGTGTCAATGCACTGCATGTGTTGGGATTTTATGAATCCTCTTTTCAGAAATTGTATTTTTAGAAATTATAAACACAGATTTGTGTTACATTATTCATAGAGTCATTATTCGctcatttaattaatattttgtcattaaTGTTAGCAGATGACTGTGTTACATGCAGTTTGTTAGTATCTTTTAAGCCCCACCCCTCATCTGCCGTAACGATTACACTTAGCCCCGCCTcctcaaaaatgttaaaacagtgCAATGTTTCAGTGAAAATCTTTTCGCTTTCACGTAACTAGTGATTCGTACCTAAATGTAGTTGCAAAGTATGTGAACTGTGATTCGTAACCGTAACATCGGTATAGTGACAATGTAACATGAGAAAAAAACGAGAAATTGAGAATTGACGTGTCTgatttataaaattacaatctTATCATTGCATTGACATACGAATCATGTGACTGGAAAATGACTCCGTATTGTTTTGCTCTGATTATTGGATTGTGTTTTTATGGACAGAGCCTTTGCACCCAAGTCAATTCTATACAAAATTTGATCTAAAACAAATGAAGCATAAACCCTGCCCCCTTGAGGTAACatgaaccaatcagaattgtaCACACCAGTTTCATCGTATGAATTTTTAGAATTGTGCTATAATGCAGCAGCATTGGTTTTGTCACATTCTATGTTGTACAATCACCttcgcccacacacacacacacacacacacacacacacacacactctttgtttCCGATCACTTTGTTATACTAGGAGTCTTGAATACAGCTGTGGGTTTTAGTTTACTTGGAGCAGGGGATGCTCAAGAAGAAAAGAGTAAAAGGCAGAGCACGCAGGgaacgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtcgtaacCCCttcgtccctctctctctctcctctcctcccctgTCGATCTGAAAAAATTCTCCCATCCTAATGAATCACAGAGTGTCGTCTTGATGTCTTGGTGTGTGAGACAGTTGCGATATCTCACTATCCAAGAATATTGTGATTTTGTCAGCTGACACGAATATTGCGATATCTCAATGTATCTGCGCATGAAATATCTGGAATGACGTGAACACTGTTATACTTCAACAAGACAGAAAATTGTAGCATCTCTTGAACAGCATGACATTGTACGTGAATACAGAGACATGAATATTAAGATATCTTAACTCCGTCTGCATCTGGACAGGCGTGAACAGTGATTACgtaggtgtgtgtgaatattttgaTATGGcgattttcatgaatattacTGTATCACAAACATGAGGAACATCACATTGACATAGCACTCGAGAATTTCACAATCTGTGCAGAAACATCACGATAACTCCAGGTGCATGGATATCGCACGCGTGTCAGTGTGTTGCGATATAGTGATGCTCATGAATATCACGGTATCTCAAGGTGTGTGAAAAGTGAGATATGTCAGTATCTCGTGTATCCTAATGCACACGAATATCACACTATGTCAGTACGTGTGACTATCGCCAGGTCTCGTTGTGTATCTTGTGCGCGAAGATATCGATATCTCATTGTACGTGAACATCACGAGATCACGTTGTGCGTGAATATTATGGTACATCTGTGCATTAAGATATTGCTATCCCATTGTCTGGGATCATCACAAGATCTCATTGTGCGTGACGATATCGATATCTCATTGTACGTGAACATCACGAGATCACATTGCGCATGAATATTGCTATATCTCACAGTTGAGGATATCAAGATCTCGTGTGTTAAGATATCTATATTGTGTGTCTACATCGTGTGTGAACATCGCAATATCTCACTGTTTATGAATATTATGATATCTCTGTGCATTAAGATAGTGATATCCCACTGTTGGGGATCATCGCAAGATGTGCGTGACGATATCGATATCTTGCTATGCGTGAATATTGCGATATCCCGTTCATGAATGTCGCGATATCTCATTGTGCGTGACGATATCGATAtcctgttgtgtgtgaatattgCGATATCCCGTTCATGAATGTCGCGATATCTCATTGTGCGTGACGATATCGATAtcctgttgtgtgtgaatattgCGATATCGTGTTCATGAATATTGCAGTATCTCATTGTGTGTGAATATCGGGATCGCTCTGATTATTTTTTCGCCCCCGTCCCAGTTGGTTGTCGCGGAAAAGGAGTTCCTGTTTGATACGAAGGCCCGGCTCTGTGTGCCCTACAATATTTCGAGCGCCTATGACAATCATCTggaaaagacacaaaaaatcatgatttcattttcttcctttctttcggttttttcttgtttttcagtcCAAAAATGGACTTCTTCTTCGAGCGATGATCATATTTagataaatactttttttttttttttccccaaagcagTGGCTCGAACTGCGTTGTTCCAGTTTACTAGCTGAGCACTTCTTGTGTCATGCAGTTTTATGGTTTATCGCTTTTTGTCTAAGCTTCATCTTCTGTGCTTTTTATCTATTCTGTGTCTGATAAAGAGAAAAACGGGAGCGATGCACTAGGCGTCCTTCTCCGGTTGTGTTTCTGTAACGCCTCACAGTTTGCGTTAATtaacagtgtgttttttctttcttgtctgactttgctctccctctctccctcgctcctttttctttgtttctttctctctcttcctctgccGTGCAATATCATCTACTGTGTTTgctaagcaagaaaaaaaagagaaaaaaaaacagaagcaagtgatgatgtcatcatgctttttttcagtgttgaaATGTTTCAGCATTTCTGTAGTCacaaaaaatgtagaaaataaaaacagttggGTTTTCCAGCACTGCAA

Function

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process

KEGG:

id description
K08026 ONECUT1, HNF6; one cut domain, family member 1 (hepatocyte nuclear factor 6)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110246 lncRNA downstream 92432 1996680 ~ 1999302 (-) False LOC113534649
TU110241 lncRNA downstream 95113 1995031 ~ 1996621 (-) False LOC113534649
TU110078 lncRNA downstream 211161 1877009 ~ 1880573 (-) False LOC117597531
XR_004578309.1 lncRNA downstream 211167 1876965 ~ 1880567 (-) True LOC117597531
TU110073 lncRNA downstream 229320 1861949 ~ 1862414 (-) True G92592
XR_004578342.1 lncRNA upstream 61939 2171874 ~ 2173454 (-) True LOC117597579
TU110295 lncRNA upstream 114249 2224184 ~ 2224457 (-) True G92763
XR_004578340.1 lncRNA upstream 130503 2240438 ~ 2260923 (-) True LOC117597578
XR_004578341.1 lncRNA upstream 130503 2240438 ~ 2260866 (-) False LOC117597578
TU110314 lncRNA upstream 192171 2302106 ~ 2302430 (-) True G92782
XM_034304997.1 mRNA downstream 5496 2036318 ~ 2086238 (-) True fam214a
XM_026927595.2 mRNA downstream 58279 2019857 ~ 2033455 (-) True LOC113534648
XM_034305080.1 mRNA downstream 76769 1996666 ~ 2014965 (-) True LOC113534649
XM_026926935.2 mRNA downstream 99247 1987373 ~ 1992487 (-) True arpp19a
XM_034305210.1 mRNA downstream 107401 1906518 ~ 1984333 (-) True myo5aa
XM_026927364.2 mRNA upstream 489606 2599541 ~ 2623825 (-) True rab27a
XM_034305220.1 mRNA upstream 529929 2639864 ~ 2656507 (-) False ccpg1
XM_034305216.1 mRNA upstream 529929 2639864 ~ 2656506 (-) False ccpg1
XM_034305217.1 mRNA upstream 529929 2639864 ~ 2656506 (-) False ccpg1
XM_034305214.1 mRNA upstream 529929 2639864 ~ 2656506 (-) False ccpg1
TU109993 other downstream 322939 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 443448 1628629 ~ 1648286 (-) False sema6dl
TU109967 other downstream 447517 1627801 ~ 1644217 (-) False sema6dl
TU109955 other downstream 560672 1515738 ~ 1531062 (-) False LOC113525562
TU109770 other downstream 865432 1222721 ~ 1226302 (-) True c6h15orf48
TU110620 other upstream 639453 2749388 ~ 2751169 (-) True G93046
TU110621 other upstream 649677 2759612 ~ 2768298 (-) True G93047
XR_004578380.1 other upstream 1319093 3429028 ~ 3531691 (-) False kcnab1a
TU111361 other upstream 2063353 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 2382611 4492546 ~ 4492739 (-) True LOC117597618

Expression Profile