RNA id: TU110620


Basic Information

Item Value
RNA id TU110620
length 1626
RNA type TUCP
GC content 0.39
exon number 3
gene id G93046
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2749388 ~ 2751169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCATGAATAATTAAGACATATACATATTTGCATGTGATTTAAATGTCAGAACATTTTTCAGAGCTTCGAATTGTTAAATGTTCTgaattctgtaaaaaaaaaaaaaaacaacagaattagTGAACCATTGCCTTCGTTTAGGATCCTGAACATTAATGAGCTTTAAATGAGGGTTTAGCAGTGCTGCGTTTATAAGCTCTCTGCTTGTTCTCATTTGTGCTATTCTCGGCTCCGAGCTGAAAAATGTGACTCAAATCTGCTAGAGAGAGCTGAACAGACTGCATTCCTGATGCTTTGTGGTTTGAGACCCTAATTTCGAGCAAATGTGTGcctgctgtggaaaaaaaaggacacgTTGAGAGCAAAAAGCAAGAAAACCACATCTTCAGTTAAGCCTGTGTCTCCTGCTGGAGAAATACGTTCATTAgtctgcttgtgtttgtgtgttttgacgGTGAAGTACAGAGAGAGCACAGTGCGACGTTTTAACACGTGTTTGCACTGATGTAACACTCGTTTGTGCTGTGAGAGACATTAACAGTACCGACATGTTGAGAAGTTTAGTAGTTGCAGGTAGTTTTTGTCGTGTGTTATGAGGGGAGAAAAACTCGAAACTGGATATTATTTGttccaaaaaaacaagcagctcaggtttctgtgtgtgttcagctctgaaacatttttgctttgcagttttttccagtaaaattatttaatgcGTGTCTCATGTGGAATTTCCACCagcacaaatataaacacagcaaatgtgtgtgactgtgtttaAGCAGCCCGTACTTTTCCTGAGCACTCGTTTACTCGTGTCTCTCCATCTGAGGTGAAATGTGATGCATATCGTGATACATGATGAAAAATCTGATATGagaaataaatttaaagcaGAAAGTGAGTAGAGAGGCTGTTACATTGTGGTACACAGTGATCCAGAATAGAAAAGCCAGTTTACGTTTTAGCTTTCAGGAGGCCATgaagactgacaggcacagaggccacgcctccttcactgagactgacaggcacagagaagctccgcctccttccctgagactgacagacagagaagctccgcctccttccctgagactgacacacagaggccacacctcctttaatgagactgacagagaagccacgcctcctttactgagactgacacacagagaagctccgcctccttccctgagactgacagacagagaagccacgcctccttcactgagtctgacagacagaggccacacctcctttactgagactgacacacagaggccatgcctccttcaatGAGATGGACAGACACCTTTACTTAATCTATAAAAACGCCTATCCTGTCTGTCATCCTATCttccttttattctttctttcctttattctttccttttttatttctattattctttttgtttctttcattttttcttttattttttctgttttcttttgttttctttatattcttctgtccttttctttcctttgtttcttttctttttttttgtttcatttcttccttaattttatttcttcttctatttttattatttgtgttttcttttcttttctttcctgattttttttcttttgtttgttatttcttgtatttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110609 lncRNA downstream 111387 2637007 ~ 2638001 (-) True G93036
TU110598 lncRNA downstream 122665 2625924 ~ 2626723 (-) True G93028
TU110593 lncRNA downstream 122665 2626052 ~ 2626723 (-) False G93028
TU110595 lncRNA downstream 122665 2626052 ~ 2626723 (-) False G93028
TU110591 lncRNA downstream 122694 2625924 ~ 2626694 (-) False G93028
XR_003403502.2 lncRNA upstream 155158 2906327 ~ 2918822 (-) True LOC113534492
TU110833 lncRNA upstream 343539 3094708 ~ 3094939 (-) True G93231
TU110956 lncRNA upstream 448217 3199386 ~ 3200701 (-) True G93342
TU110963 lncRNA upstream 460422 3211591 ~ 3211804 (-) True G93349
TU110964 lncRNA upstream 460699 3211868 ~ 3212123 (-) True G93350
XM_026927384.2 mRNA downstream 27366 2681280 ~ 2722022 (-) True prtga
XM_026927388.2 mRNA downstream 74698 2670950 ~ 2674690 (-) True pygo1
XM_034305149.1 mRNA downstream 78519 2659703 ~ 2670869 (-) True dnaaf4
XM_034305220.1 mRNA downstream 92881 2639864 ~ 2656507 (-) False ccpg1
XM_034305216.1 mRNA downstream 92882 2639864 ~ 2656506 (-) False ccpg1
XM_026927600.2 mRNA upstream 37693 2788862 ~ 2791363 (-) True LOC113534652
XM_034305155.1 mRNA upstream 48454 2799623 ~ 2860959 (-) True pepd
XM_026927431.2 mRNA upstream 297091 3048260 ~ 3053195 (-) True LOC113534544
XM_026927419.2 mRNA upstream 305535 3056704 ~ 3061495 (-) True LOC113534536
XM_026926991.2 mRNA upstream 313501 3064670 ~ 3068301 (-) True LOC113534302
TU109993 other downstream 980593 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 1101102 1628629 ~ 1648286 (-) False sema6dl
TU109967 other downstream 1105171 1627801 ~ 1644217 (-) False sema6dl
TU109955 other downstream 1218326 1515738 ~ 1531062 (-) False LOC113525562
TU109770 other downstream 1523086 1222721 ~ 1226302 (-) True c6h15orf48
TU110621 other upstream 8443 2759612 ~ 2768298 (-) True G93047
XR_004578380.1 other upstream 677859 3429028 ~ 3531691 (-) False kcnab1a
TU111361 other upstream 1422119 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 1741377 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 3442906 6194075 ~ 6194147 (-) True trnam-cau_19

Expression Profile