Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU111190 |
| length | 273 |
| lncRNA type | sense_over |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G93557 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 3579017 ~ 3581206 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU111130 | lncRNA | downstream | 124646 | 3425023 ~ 3454371 (-) | True | G93505 |
| XR_004578300.1 | lncRNA | downstream | 156859 | 3406145 ~ 3422158 (-) | True | LOC117597513 |
| TU111001 | lncRNA | downstream | 211822 | 3366721 ~ 3367195 (-) | True | G93380 |
| TU110952 | lncRNA | downstream | 343365 | 3227269 ~ 3235652 (-) | True | G93339 |
| TU110953 | lncRNA | downstream | 343365 | 3230950 ~ 3235652 (-) | False | G93339 |
| TU111281 | lncRNA | upstream | 153891 | 3735097 ~ 3735392 (-) | True | G93639 |
| XR_004578346.1 | lncRNA | upstream | 363781 | 3944987 ~ 3946376 (-) | False | LOC113534402 |
| XR_004578345.1 | lncRNA | upstream | 363781 | 3944987 ~ 3946376 (-) | True | LOC113534402 |
| TU111341 | lncRNA | upstream | 492009 | 4073215 ~ 4073533 (-) | False | LOC117597611 |
| TU111357 | lncRNA | upstream | 574051 | 4155257 ~ 4155497 (-) | True | G93707 |
| XM_026927744.2 | mRNA | downstream | 19854 | 3550081 ~ 3559163 (-) | True | LOC113534786 |
| XM_034305556.1 | mRNA | downstream | 30266 | 3425718 ~ 3548751 (-) | False | kcnab1a |
| XM_034305553.1 | mRNA | downstream | 47326 | 3425718 ~ 3531691 (-) | False | kcnab1a |
| XM_034305554.1 | mRNA | downstream | 68446 | 3425718 ~ 3510571 (-) | True | kcnab1a |
| XM_026927330.2 | mRNA | downstream | 180489 | 3367401 ~ 3398528 (-) | False | tiparp |
| XM_026927610.2 | mRNA | upstream | 184723 | 3765929 ~ 3771200 (-) | True | LOC113534660 |
| XM_026927468.2 | mRNA | upstream | 199174 | 3780380 ~ 3783481 (-) | True | LOC113534571 |
| XM_026927704.2 | mRNA | upstream | 206038 | 3787244 ~ 3792996 (-) | True | LOC113534753 |
| XM_026927461.2 | mRNA | upstream | 220196 | 3801402 ~ 3804565 (-) | True | LOC113534566 |
| XM_026927464.2 | mRNA | upstream | 231761 | 3812967 ~ 3815736 (-) | True | LOC113534568 |
| XR_004578380.1 | other | downstream | 47326 | 3429028 ~ 3531691 (-) | False | kcnab1a |
| TU110621 | other | downstream | 810719 | 2759612 ~ 2768298 (-) | True | G93047 |
| TU110620 | other | downstream | 827848 | 2749388 ~ 2751169 (-) | True | G93046 |
| TU109993 | other | downstream | 1810222 | 1768405 ~ 1768795 (-) | True | G92531 |
| TU109968 | other | downstream | 1930731 | 1628629 ~ 1648286 (-) | False | sema6dl |
| TU111361 | other | upstream | 592082 | 4173288 ~ 4173594 (-) | True | G93711 |
| XR_004578382.1 | other | upstream | 911340 | 4492546 ~ 4492739 (-) | True | LOC117597618 |
| trnam-cau_19 | other | upstream | 2612869 | 6194075 ~ 6194147 (-) | True | trnam-cau_19 |
| trnap-agg | other | upstream | 3284062 | 6865268 ~ 6865339 (-) | True | trnap-agg |
| XR_003403498.2 | other | upstream | 3566738 | 7147944 ~ 7157488 (-) | False | LOC113534453 |
