RNA id: TU111702


Basic Information

Item Value
RNA id TU111702
length 6375
lncRNA type sense_over
GC content 0.41
exon number 4
gene id G94010
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5076140 ~ 5179801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTAACCAATCGGTATTTTATTCCCACCTGGAGGCCTACTTTCTGTTCCAGCCCGAACATTCAACATAAAGATTTTTCTCTGATTAAATGATTCAGGTTGCTTCAAGGACAACAGGGCAAACAGGAGTGAATAACATTGTCTTTATTCTATATTCACACAGGAGTCTCACGTCATGACGAGCTGCAATGCTGCacagtttaacattttttcagGGTTTGAATCTAACTTCAAGTAGGAAAGTTAGGAAAGGAGAACACTAGACTGTGAAAGGCCTGTCTGGATGTGAAAGCCATTTGGAAATAGATTCCATTAGACAAAGTCTAAGTCTCTCTTTATATTGTTCTCCTGctacagatatacagtatactgatgAGGGTCAGTGGAAATAAGTGATGCCATTTCTAGATCTGAATtgtaactgaattaaaaatttACCTGGATATAGTGAAATTATCCaacttaaaacaaacaaacaaaaaaaaagaaactagaaGACAAATGAGGTATTCCAGAAACCACTTGCATATGCATAATACACAGACAGATGTGGAGTTGAGGTGAAGTGGTGATACAGCTGCTGCTGAGatttctgacatttctgagTAAAGTCGAGAAATGAAGAGTTCCTGCTTTCGAAATGCCTCGTTGACTCCCTGATGACGCAGAAAATTCGAGGAGTGTGtcgtgtgtagtgtgtagtgagcaTTAAGATTTCTCAACAGGAACACACTCAACCCTGGGGCAACAAGAACACTGCAGATGAAGTCATTTCCTTCATGGtttacagttgtttttttttcattcgaATATGCTCAAAGGActcaataataaaaatcattagATATTTTTGAAATAGTAAATATATCATCTCATTTTCACTGAATGGAAGTCTCAAATCTAGTGATGCACCAATCCGATACGGAGTACGAGTAGGACGGCTGGTGTTCCCCTCAatcagtttgtgtttgtgatgtaTTTTATGCTGTTGACTTTCAGCATGCAGAGagtctgatatcttttgtacacttttctggccacaagcttcagaatatTTGaagctgcaatctgattggctctctgcaCTTTCATGTGCTGGAATTCAGCAGGAAACCAAACCTGAACATGACACAATGAGCATATCATCACTGGACTAAAAAAAAGCCCATGGCATCCCATCTTACAAGTTACAGAGTTTTGTTTGAAGTGGGTAGTGATgagtaaatgaaataatgtcACATGTTGATGGCTTAGGACAAAAGAGCCGTGATTGGTCAACTGACATGTCAGTCGTACGTCTTTTTCTGTAAAAGTAGACAGTTCTTGGTCAAGTTTATTGGCAAAACAGATTGTCCTCAAAGCCAAAAGTCTTGTCAGACTACCTACACAACAAAATCTTGTCCAAGGCACGATGGTCTATTGTACGTTTCTCATAACAGAAGTTTGTAGAGATTTGGCTCGTGATATATGATACTCAATGCACAGCTCCGTATTGACACTTCATTTGGTGCACCCCTACATATATGAGACTgcaatgccttctgggtaaaGATCTGTTCCTGTTTTTGTCTATTTCGCATCAGAATGTTAaaggctgcaatctgattggctctctgcaCTTACGTGAGCTGAATTTCATGTCAGAAAAATTTGAATGAGTGTTTCAGACCATGACATAGGCACTGGACTCAAAAAATGTGAAGTTGTTACTTCACTTGTTTAGTGAGGAAGTTAATGTCAGGTATTTGTCGACTGTAAAAACAGGCGGTTCTTGGTCACGTTTACTGATGAAGTGTACCAGATTGTCTTCGAAGCCCAAAGTCTTGTGAGAGACTAACTCCACGACAGTGATTTTGCAAAGTCACGCCTCGGACATTTCCCATAACCTAGACGTTCATAGAGATTTGGCTTGGGTATCTGTGAGGACATCAGTATCAGATCGCTCAAGAGTGCTGATGTCACAGCTCTGTATTCAAACTGCAGTTCCTACATTTTTAAGACTGCAATGCTTTCTGGGTAAAGTTCTGTTCCTGAATTTTACACTCATGCTGACCTGACCACCCAGGATTCACTAAACTAAAGTACTGGAACATCTATTATGATTATACAGGGGAAGTAGACAGTTAagcagcttctctctctctcacacgcacgcacgcacacgcacacacacgattcctttgtaaactgtaaactgaaTACATATTGTACTGAAGCACCATCTAGAGGCAGAACACCTGGCGGTGATGGATTGTGAATGATAAAGTGACTAATGTAACTTTTACCTTTAAAACCTGATCATCTGATGtgcaaatgtacacacacaaacacacacacactcactcattcaaaACCAGAAGGTCTTTAAAATCTACTCAAATATGTATAACCTGTAagaccagtaaaaaaaaaaaaaaaatctaaaatatataaatacgcCTGACACGGTGTGTGACGCTGATTGTATTTTGTGCAGCTGGACTTTAAAGGTACAATTCTCTTCAGTTTGATAAACCCTTGAAAAAGAGCCTCGACATTCTGTTCTGGAGAAATCCTGAAACCCGTCCTGGTCTCTCCAGCGATTAAGGCAACTACAGCGTCCTTTAACAGCAGCAGTTCATTTGAGCGCAACTTTTCCCTGACTGTAAAAAAGCATCACTGTACACGACGCTGAGCCTCACGGCTGTAAACTGCTccgtggggaaaaaaaaaaaacaaaaacaaaaaaacacacaattcacaAATCTGATCGCAGATACACACATGCTTTAGATCAGCAGTGTGGAGAAGCACAAAGCATTTACAAGCAGCTAAGCATATAAAGGAAGGTGAAATTTCAGAAGGGAAGGCATGAGGCATTTGGCAAAATGTACTTCCTGAGCTTAGAGAGACGGAGCAAGAGACAGACAACACTACATGGTGGTTCCTCTTTGGGCACCTTCagtgttttcatatttaaaaaaaaacctcacatcTACTTTCCAGAGTGATACATTTCAGACCTCCACTTCAATGATCTCCTACactatttaataaaatcattactAACCAACACATCAGATCCGTTCCTCTCCAAACATCCCCTTTTCTCCCTCAACAAGATCCTGGTGCTGGTTCTAGAGTCGGTACCAACAGTACCATCAAACCGTTCTGTGCTTTTCCACCACAAAAGAGCCAATTctttttctgtaattaaatcCCAAGTACTGTTTGACACgcaaaaatggaagagaaaCTTATAAATAACCGTGGGTTCATCTTATCATCTGAAATGTGTGCAGCGATATATCAAAGCGAAACAAAGCTTGAAAAgcaagtagcagagatcattaaTGCTTCAGCTGAATGTACGTAGCTTGTACAGTTAGCTTGCGAATCTGTCAACGAAGCTAGTACATAGCCGAGCACGTAACACGTGATTGCACAGCAGGGTGTAGGAGATACATTTTGGTTACTGTTGTTTCTCatgagaatttaaaaaacaccCACAAGCGCCGAAAGTAACAGTcgctacacacccacaagagacaaagcGGCTTCTTGCTTGCTGTCGTGTTACGCAATGTACCTTCACAAGCAAAATGATTCTGCTCTCCaaggaacagctttactttTCGACATGACATGGCAACTTAAGCATAACTACGATTAGTAGAAAATGCATGAAGGAGTTTTGAAGTTTACGCATCTCAAACGAGAATCTGCAGCTGTTGCTAACAAAACCGCCCTAGAGCAACGTCCAGTGTTCTCCAAACCAATGGAGGACTTTTTAAGAAACTCTCACATCTGATTACAGTTCGGTTCTCAAAGCGGTGGAAAAGCAGCTGCTTCTTAAAAAGCTCTCCTGGTTCCTGAAGCAGCAGCGGTTCCAGCACCAGCACTGTGTCGATAGAAAAGGGGCTTCATTAATCTCTGCTATACTGATATTGTACAAAATGGCATCCATAGAGTTCAATTTTTGATTTAACTTGAAAAAACTGTGGGCAACAAATGCTCTGTACCCCGTGGTTACagtcagacagatagaaagtGAGCTGCTCTTTGGTATCTAGCTGTGCAAGCGATCCAGAATGCACCACCATGATTGTACGAATGCAGAAAAGTACGTaagagatgaagtgagagagaaatcTCTGAATTTGGGGGAATCTGGAATCAGGCAGGAATTCATGGAATTCTGATTCAGCAATCCACAATGCTACTCATGTCTGGTTGTGTTCCAATAGCACGGCAGCACGGGATACGTTAGTGTCTCCATCAGAGAGCATGAGGTATTTctcaaagaaaataaagactaACGATGTTTTTTACTGACCATAAGAGTCATCAGAGTAGTTCCTGAGAAAGCTGCCTTCCCATTACGAGAGGCAAATATCAATGCGATTTGATTTTACAGCGTTTCAAATCctgagaaaaatgaataaaactagaACTAAACACACCCATAAGCACAAAGTGACGAGACGCAGACTCTCGCGTTCTCTACGCTATTTAAACCATACTCTAATATATTCCAGCATCTCGTCAGTGTGCAGGTTCGAGAACATCTGGCTCTGGGCTGCCATTCAGGCGCTTGTCACCCCGACGCCACCTTCGGTGATTGTCCTACAGCATATAGTGACCACATCTCTGAGCTATGCACGAGCTCAGAGCTATCAGAGCTATTCATGAGTTACGCTGGGTGCTGCCCTAccaataaaacataataaaagtaaaataaaacatcagaaaTCCACAGCTGAATGACGTTGAGGTAGGTTGTGACGTCTAAAAGCTCTTAAACTGTTCAAGGCCCAGTCTGAAATGAAAAGCCTGCCCGAGGCCACAGACTGGAGGAGATATGATGAGTAGCATTACACAGAAATACTGCACTCATTCCTGAGAACACCacacatttactgtacatttcctcatatttactgGTTTGAGGTATTTTCTGGTACTGTTCAGaccatcagcagcagcagtattCTGAGCATTCTGAACAGCACCTGTCAGTGTAAACGCACACCGTGGGCACGCAGCTCGCGAGCTTTGGAAAAGTTCAGCTGCATTTAATTCAAGTTGAAACTTTGGCTCGTTTTGCAGTTGTAACGTCTCTGTGATCAGAACGTCGTCTTCTTTTCTAGTTCTCCTGTTCATCCAAAGGAGCCTAAGCCTGGGTTTATACTTGCTTTTAATTACGTGTGTGCAGAatggctgctgtgtgtgtgtcctgcagtCATTCAACACTCTGAAGGGGGTGTACAGCGTGATGTGACGGGATTTAAAATAACTAGAACTGTCTCTCAAATCACATTCACTAATTTAGACAAATCTCCTTATCAAAGTTACTGTTTGAATTTGCTGAATCTTCTGTGATAAGTAAatcaaatttttaaatgtaaggaCATTTTTTCGGAGACCAGCGCATGATCGGAAAGTTTTAAAGATGTAACAGCAACATGAGCTGCTGATGGACAGAGCTGCTTCAGTGGACGTCAATTTTAATCCTGCCTGAGTACAAACAGTatgcaggtgagtgtgtggcTAATGCTGCTCACACTGCTGCGTCCACAAGCACACACGTAGTTATGCTTCAGGTATAAACCAGGTCTAACCCCCAACAACGCTGCAGCTAGGTATGAGGTTTTAGGCTCTGAGGAAAGTGAATGTATAGCAACACGATGAGGTGAGAAAATCCCCTCTTTTACTGATTCTAAGAAATTCAAATAGATTACgaaaataaaatttactcaGCTAGAGTAATTACTACAGCTCCTGAGGTAAAGATGTTACTGTAATATTCACCCGCTGCAGATTGCTCAATCTGAGGTATgtaaaaagaggggaaaaaagagaggaaaaaacattttaaaaaatccaaactcagaagacaaacaaaatagcatttttttttctcctaaataaaaatcttcaaGTCCTGTGATGAACACCTGTCAGTTGATTTTGGCTGAATGTCCTGATTGTGTTTAGCGTTTTATTTAGCACAGTGTTTGTGAATAAGTAATTtgtacatgtctgtgtgtatgtatgtgtgtatgcatgtgtgtctgtaCGTGTGTacgtgagtatgtgtgtgtgtgtgtgtgtgtgtgtgtattaaatatgTCTGAACATGTATAGACAGCCAAGACTGATAAAAAGTAAATGAGGTACTGGTTGCGTAAcagtctgatttttttcaaaacatctTTGCGAGGTGTGCTGCAGTTGTGCCGCGGCCTGGAGGAGGCTGAAGCCTGGGCAGGGGAGGACTCGGCCTCCTCGGCCTCCTCGTCCTGTACTATGGTGAGCCGCTGGTGGACGGCTCGGCTGAGCTGGGACCTttagaggaagaggaggaggggcTGTGGCTGGGGAAGGTGTAGGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111675 lncRNA downstream 64707 5007425 ~ 5011433 (-) True G93988
XR_004578349.1 lncRNA downstream 104537 4966634 ~ 4971603 (-) True LOC117597587
TU111595 lncRNA downstream 182066 4893586 ~ 4894074 (-) True G93926
TU111561 lncRNA downstream 291009 4783925 ~ 4785131 (-) True G93896
TU111413 lncRNA downstream 529435 4546439 ~ 4546705 (-) True G93753
TU111756 lncRNA upstream 152273 5332074 ~ 5336409 (-) True G94058
TU112022 lncRNA upstream 208301 5388102 ~ 5391848 (-) True G94284
TU112021 lncRNA upstream 210454 5390255 ~ 5391848 (-) False G94284
TU112069 lncRNA upstream 380754 5560555 ~ 5562406 (-) True G94325
TU112137 lncRNA upstream 459895 5639696 ~ 5642936 (-) True ss18l2
XM_026927814.2 mRNA downstream 99876 4973008 ~ 4976264 (-) True p2ry1
XM_026927337.2 mRNA downstream 145420 4928340 ~ 4930720 (-) True LOC113534489
XM_034305132.1 mRNA downstream 235106 4785197 ~ 4841034 (-) True LOC113534715
XM_026927227.2 mRNA downstream 398780 4642261 ~ 4677360 (-) True LOC113534432
XM_026927724.2 mRNA downstream 441383 4630852 ~ 4634757 (-) True LOC113534774
XM_026927159.2 mRNA upstream 174820 5354621 ~ 5372127 (-) True ulk3
XM_026927723.2 mRNA upstream 229766 5409567 ~ 5414923 (-) True larp6a
XM_026926920.2 mRNA upstream 390594 5570395 ~ 5583415 (-) True gpib
XM_026927290.2 mRNA upstream 460812 5640613 ~ 5642949 (-) False ss18l2
XM_034305201.1 mRNA upstream 465015 5644816 ~ 5658105 (-) False lsm14ab
XR_004578382.1 other downstream 583401 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 902546 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 1544449 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 2307842 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 2324971 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 1014274 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 1685467 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 1968143 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 2262572 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 3288500 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile