RNA id: TU112069


Basic Information

Item Value
RNA id TU112069
length 1794
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G94325
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5560555 ~ 5562406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGGTTAAATGATATGTCCCAACTTCttataacattaaataactttaaaccttttttcgtgtttagataaataaatctactttccttttttatttatgaaatatctAAGGAATCAAAACATTGAATGATACAAAAAGCAGAAGGTGAGATACGCGTTCTGAGAACTACACTTGAGAAACAAAGCTACGGCTCACCGCCGTGTCGGATAGAAGCAGAGAATAAAAGCTAGCGGTGTTTATTTACAGGGAATCTATCTGTGTTCTATCAAATAGTagtacatttttgtattaaGTGTATTAAGACATCGTGGAGAGGATAATAATATGCAGTTCTGTAAAGGTGAAACGACCTTTCTGGGAATGATTTGAGAAAAAATATCAGCGTTGTGTGGAATTCTGAAagtgactcaaaaaaaaaagtcatttctgtgcatttttgaGTGGAATTGTTCACtccacaggaagtgtgtgttagaaatGATGATGTCGAAGACAGGATTGGTTTCAGCCTGCCTGTGTCCACTCAGTAGCGTTACAGCAGGGCTTCTTTATGCATGTGataggccacacacacacacacacacacaaaaccataaCCATGTCATCAggttgagacacacacacacacacacacaaaccataacCATgtcatcacagacacacacacaaaaaaaaacataaccatGTCATCAGGTTGCCATCAGCACTTgcattctgacacacacacacagacacacacacacacagccaagcAAACAGCCACATATAAAGCGGCCCTGCCACTGATGCATGTTGGGAatgttcacatacacacatccatCCTGTGGAGCTCAGGTGAAACCAGCACCTTTGAACTTCAGCAGAACATCAGATCCACTCACAAGCAAAAGAATATCCGAACCGCGATCCTCTCTCCCGTCACAACAGCTGCAACACATCTCCAGCGTGTATCCTCCCAGACAAACCAGTGTTGGGAAAACGTACACTGCATCGGAGTCTAGTACCAGCTCAGAAATGATGCACCGAAGCGCTTGAAGCTCCAGTGACGGAgcacaaaaatggaaaactCTACAttcatgtaaagaaaatgtCTCTGAATATCAATAGGGTTAAATATGATATGTTAAGGCGGTATGTGTGTGTCAAGTTGTGAGTGTGGCTGCTCACATTGACACACAAAatgtaatgtctgtgtgtgtgtgtgtgtgtgtgtgtttagtgtgagcACATTGTAAGGATCTGTATTCCTTACCAgtatcacatcacatcacacatactgtatatatgaatacAAAACCACATACAGATATTAATGGTGCAACTTGAAGgcaatgagtgaaaaaaaaaataataataagtgcgAGATTTTCAGTGAAAGGCCACTTGTAAGGCTTTTCCTTTCTCGGAATGTAGCTGTATATGCTGGTTGTGTCCTGCAAGTGTTAGGGACCAGGGGGTCAAAGTTCGAGTCTGTGACATCATTCCAGGGTGcagctgcagagagagacagaaaaagagacaggaaCTGAGTGTGTTTCCCGTCTGTCTGTGCCTCGTTTCAGTGAAGGTGTGGATGGTTGGAGCAGCAACAAACgtcacacacatctctctccaTGGCGCTgtctggtctgtgtgtgtgtgtgttcacagctCAGTGACATGAAGCGGATAGCTGGCTGGTGGTTGGGAGGGACCAGAAGCTTTTAACCGGTGGAGGTGGCAGGCATGGCACAGCAGGTGACCCTCCAACGGGTAACAGCGGTGGCCCTCTTCATCAGTCAGCTGAAGGCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112022 lncRNA downstream 168707 5388102 ~ 5391848 (-) True G94284
TU112021 lncRNA downstream 168707 5390255 ~ 5391848 (-) False G94284
TU111756 lncRNA downstream 224146 5332074 ~ 5336409 (-) True G94058
TU111702 lncRNA downstream 380754 5076140 ~ 5179801 (-) False G94010
TU111703 lncRNA downstream 380754 5076140 ~ 5179801 (-) True G94010
TU112137 lncRNA upstream 77290 5639696 ~ 5642936 (-) True ss18l2
TU112135 lncRNA upstream 78514 5640920 ~ 5642936 (-) False ss18l2
TU112136 lncRNA upstream 78600 5641006 ~ 5642936 (-) False ss18l2
TU112194 lncRNA upstream 141175 5703581 ~ 5703791 (-) True G94441
TU112144 lncRNA upstream 151437 5713843 ~ 5786431 (-) False LOC113534829
XM_026927723.2 mRNA downstream 145632 5409567 ~ 5414923 (-) True larp6a
XM_026927159.2 mRNA downstream 188428 5354621 ~ 5372127 (-) True ulk3
XM_026927773.2 mRNA downstream 453162 5085274 ~ 5107393 (-) True LOC113534806
XM_026927814.2 mRNA downstream 584291 4973008 ~ 4976264 (-) True p2ry1
XM_026927337.2 mRNA downstream 629835 4928340 ~ 4930720 (-) True LOC113534489
XM_026926920.2 mRNA upstream 7989 5570395 ~ 5583415 (-) True gpib
XM_026927290.2 mRNA upstream 78207 5640613 ~ 5642949 (-) False ss18l2
XM_034305201.1 mRNA upstream 82410 5644816 ~ 5658105 (-) False lsm14ab
XM_034305200.1 mRNA upstream 82410 5644816 ~ 5658105 (-) False lsm14ab
XM_034305199.1 mRNA upstream 82410 5644816 ~ 5658105 (-) True lsm14ab
XR_004578382.1 other downstream 1067816 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 1386961 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2028864 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 2792257 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 2809386 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 631669 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 1302862 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 1585538 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1879967 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2905895 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile