RNA id: TU112499


Basic Information

Item Value
RNA id TU112499
length 6864
lncRNA type sense_over
GC content 0.42
exon number 4
gene id clmpb
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6197243 ~ 6281530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGCTATTCATGAATCGTGTCCCTGGTTGTCCCGAGAGCGTGCGCGAGAGCTTCGGACTCTAGAGGTCTCCATCCTCCTCCAGCATCCGCAGCCGCGCGCTCCAGTCCCAAGCATCAGCTCGTGCACTCGGACGAAAGGACAAAACGTGTTTCGAGGGAACCCGAGAGCTTGAAAGGGGCGCTTCGATTTCTCGAGCAGGACGCATGGAAGCGTCCCGGGGACGCGGCTTGGTTCCTTAAAGGCGGgaggaaagaagaagaggaggagggagatggaTTCGTCTTTCACAATATCTTAGATACGCTGTCCTTGGCGCGCGGGTGCTAcctacatttttttgtgtgcgTTCCCGCATCTGAAATAGTGTTGCTGAATTGTGCGGGAGCTTTGGCGCGCTGTAGCGCATTGAAGTGCTTTGTTTCCAACCCCAAAGGACTTCTGTCACCTCCGTGCTGTGCCGAGATGTCTGCCACATTCCAGACCTTGTTCCTCGgtaccacatttccaggtgaaagacaCGTATTCAAGGGATATAGGAAAGAGAGTACACTTCCAGAGGCTTCATTACGACCCTGCTGAAGATCATCAATGTGTCAAAACCAAAAATATATCCTAAAGGTCATTTGTttcataaatgcaaaataaaccaagataaatagCAAGGAACAAAATAAAGTGGCCCTAAGTGCTTCCTGATGTAATTAATTGAATTCATGGTCCGTAGTAAAAGTAATTGCATTCAGCATTGTTTGATTGTAATCATTAAAACGGCCTTAATTTAGTACTATTCAGGAATCATGAACCACTTCACTTGAAAAGgggaaaatgaggaaaagtggatgaatttttttttaatctataccAGAGTGCAGAGTTGAATTCCTAGCAAATCCGAACTTGATGATGAATGGGACTCTCCTCCTTTCCGAGAGGATGCCTGACTGTGAGTGAGCAATGCTAAATGACTGTCTAGCAGATTGTAATTCACTTCTCAGCACTGTAATGGCTCAGTAATGAAACaccttttttttgccaaaatgttTCATGAGCTCTTTAGAGGGGTTCGACTTATGCAACTTTTTCGTAGGTACATGTACACTTGTGGAAACTGATAGACTTGGGACAAGCAGAACAGAGTTGTTGTTTGATCAAGGATGACTGCTGGATCTTGTAGCAGCGCACAGCTACAAACCGGTTGAAGAAATGCAGATTCGGGTTCTGTGCTATATTTAGCCGATATCCTGCGGCAGAAAGCAGATCTCAGAAACCCAGAGATGACAGGACATTGCGCACCCCGAGGTTTTGAAGTGACATACTGATGCTTTTGTCCCTGAATCACTGGGATGTGCagagacacatacacagatattCAAAGGGCGAACTGTCATTCACGTTAAACAAGACATTTGAGATGGAACGCATCAAATGTCCtaatattgcttttattgtGTAGGTTATAGTCACATTGACTACTACAGTGCAAGGACAAAGACAAAGTCTACTTTTgtatccatctgtccatccctttatagggcatgtggttttatttttcacatgatcacatgttATTAACATGATGTCTCGTGTAATTTCTATGTGCAAATTCTGGGTGTAACCTGTTGAAATGTACCTTCACATGTTCATCACATAATCACAAGTGAAATGTGTATAGGCTCACGTTTTTCTGTATACACACTTTCCTGAGTTGGCTTCCACATCTGGCTGCGAAGCAGCTCGGACATTCCTGAGGTTTTCCATGAGGTCCGCGTTGGGATCGAGCAAGCAAAGGCATTGTGAGTCTAGGATTCAATGTTTCTCTACCTTGCACAGTTTGGGACTGCATTCTGACGCTTGGCCTCTCTCAGCTCGCCTTCGCTGGGTATTTCTATGGCGACTTTGATTTTATGGTGAATCAAAAGGCTTGCTTTTTCATGAAGCACTCACCTGACTGGCTAAATTGTAACCATCATGCGCTATCATTATAGTAAATGGGAGGGCTAAAAATCTACTATCCTTAACTAACTTGCTGTTAGTGTTATGAAGCCATTATTGTTGAGCCTTATAGCATGAATATATGgctggtcatgatattagatGAGAGACTAAAGTCTAACATCtatcttatattttttttcttggttgtACTGTTGTTCTTGTTTCTAAGACACTTGTACAACAGCAAATAATGAATGacgtatttttatatttgaaagaCACGGCGGCTTTGGCCCTTCTAGCCCATTTGTACTAGGCGCCAATGGTCATTGCCAGTGAAATGTATAGCATATAGACTTGCAAGAGGATACGTAGTAGCGTAGGTGTCCTGACAGACTGAACATCAGCAAGGTTACTGATATGACTGATAAATCTCATCTTTTTCCACGTCTCAGCACTCTGACAGGAAGAACACTTTGTATCAGTCACTCTCATTGACACACAGACTCTTTGTCAGTGAATGGTATTGTTGGCGTCTTTGTGATGGGCAGGCTGTCTGAAGCTCTAATTAGCCAGGTGCTGTGTTTTTTCCTGTAGAACCGAGCTGTATGTCATCGTTTATCATCGATTTACATTGACACGGACTATAAACGCTATACTGAAATTCACCATAAAATTTTCAGTGATTAAAAATCGTTTAAAAATACCGGTTCCAGATGGAACCAGATTTACGGTAACTTCGCTTGGTTGCAATGTAAAGTCAGTATATGGGAATAATAATTTGATGCGAACATGTTATTCTTGTGGTTTCATGTTGATGGAGATTCTGTTAATATTCCATGGGAGGGGTTTCAATGATACAGATGTTTTTTGCTAaattgtgtctgtctctctctcaagggaaaataacaaaaatgtattaaagaagGCGATGGTGAAATAGGCTTTTTGGTGCAATAACTCAGCTAAGAGTTCGATTGTATTTGCAAAACCAGAGATCACTGATGTCAGAATGAACGGCGTTGAAGGGAGGGAATATGCTTCGGCTTTATAGGCATTTATAGGCAAGTGTTTATTCCATCGTTCGTTCCTCGGTAGGTCATTCATTCCTCCtttatttttaagcattaaatAAAGGTTAAGTATAATTTTCTCTTGACTAAAAATAGTcctcattattatcatcaagAACCCCGAATCCTTTGTTGCGTACAGCGGAAAATGAATATAGTGTGCtgtgaatgaatgagaaatGCCAAAGGGATCCAAAGTAAACTAGAGGCAGCTTTTGAGTCGCTTTCAAAGCTATAAATCTGAGGCGTTTTTAGACCCAGCTGGCTAAATTACTCCCAGATTACTCTGTAGCTGACGAACAGGAACTGCCCATTTTCCTTCATGGTTAACCTCTGGCAGATGCTTGTGAATGGTTCATGTTTGCACTAACTCAGAGCAGATGTGTCACTCAATGTAGCTCTCAATGTAGCTTTCTTTCAGAAGTTTTTCTTCATGCATGGAACACTCCACCCCTGGTTCAACACACATTTCAAGTTTTATAAAGCAGCATCCGTGATTGCCAGGCCCCGCAGGGTTAGGTAATCGCCTCTGTTATGCCCATCTGCATGCAAAAGCAAAGTGGAATCCTGCATTATTTGCCATGGTAAATAACCATGAAAGTCAATGGGGCAAAAACAATTGctgagtcttttttttccttcttaacAGAGTCTGGTTCCTGGAAATCTCTAACACGCTGCCCGAAGCTTTCAGAGAGTATAAACACTTTGATGAGGGTCTTCACAGAAGTGCTGAGATTTATACAAAGGCAAACAATGACCAAATGTGGCGTGCATCAACGACAGGCTAATCACAGTCTGGATTTATCATGAGATATTCCAGCCAGTGATCGTCACAAATAAGTGAACCAAATTTACAACTGAATACTAATAGAGAAAGTTTCCATGCTAGTGCCTCACTGTAATATTTCACACCAAAATGCTAAtgatgctaataataaatgaatgacggTAAGAGGCCAGGTAGCAGGATGTTTCTGAGGCCATGCTAACACCTGTCATTCCAGTTGACTGGGTAAGCTTTTCGCATGAAAGACGATCTCCTGTATCTTTAGGAATGTGTTTTTTGAGTATGTGTGTATCCTTGAGAGCACTGGTGCTGTGTATGAGTGAACAGGAGAGCCACAGAACTGACTTCAAGTGTCTAGGTCTGGCCctagtgaagggggtgtggcctttgttCTTCAGTCTCAGTgacggaggtgtggcctttctgcctcagtgaaagaggtgtggcctttgtgcttgagttccagtgaaggtgtggcctttgtgtctcacagtgaaggaggtgtggcattTGTGTTAGCCAGATGTATGGtatttaaactgatattttgCAATTACCTAATTACATGCATCATACTGGATAGGATTTCAAAAGCATTATCAtagttatcattatcattaaaatataaagggGCCTGTCATTTTAtagtctctctcactctaatTGCATATTATTGAATTATTGGCTCCTCCAGTATAAGTATTTTTCATAGATTTGATTGTTGCTCATGCATCGAGGCGCTCATCACATTATCTTGGAAGGAGAGAAACACCCCCAGTGCTGTGTGCTCCAGGGAGCGTGCTAACTTGTTAGCAAGCCAGCGTCTGGGTAGGAACTGGCAGACAGGGACATGGGGAGGAGGCTGGCGCTCTTGTCTATTTACAGCCCAAGAAGCTTTGATCTACACTCCCTGGGAATCAGAAAGGGTTCTCTGTGAAGGTGCAGTGATCTACTTGCACAGAATggaaataaaagagaataaatgGACTGTAGAAGAATGATAAGGAAATAAGACGAAGACGCTGCTGGTGGTTTAACAATCAATTGCAAAGAACAAATGTAGTTCATGGATAGATTAGAGCAGGAGTCACCAACTGGTGGGCTGCGGACCATATGTGGGCGcagcaaagtatttcactgAGCGCTTGAAAAATACTTTACCAGAGCCAGTGAATGTATGGAAAAATGGCCATAGTTCAGTTACTCTGATTTTTTAACCATTGCAGCTTCTGTaacagatcctctgttgtggttTATCCCTTCACATGcgtttatgcaaattattttttgcAGGTCATTGAACTAAAGACTAGCTTCAGGGCTACATTAGTAACGTCACAGATTTTACTTGAATACATTAGAGAATCCTCCAGGAATAACCTGAGATTGAATTTTCATGGTTGGCTTagagagcgtgtgtgtttgagggCTTATAGAATGCTGCAATGTCTGATGAGAAGTTTCTGCTTTACCATGCGCCTCTCTCAGTGCAGTCCGTCACTAAATGATGGATTATCACTGTAATCGCACCTTCTTGCAGCAGGCGTCCTTACTGAGGGTGACTCGGAGCACATCACTCACCCAGTAACCTTTTTATTCAGCAGGGTTTCGCTGAGGTACGGCATAAAGCTGTTTCAGAGTGGAGGCATCATCATTCTCTGAATTCACACTGAGGCCATTTCTGTTGCTCACTCGCCACTATGCTTTCTCATGCTTCTCTCATGCAAGGAACTCCCATAATATAAAGCAGATGTTCCAGTTTTGGTTGTTCATCGATTTCCTGGACGAGGGACTCAAAGCTAGGTAAAACAACAGCACTCGTTGTGCTTTGGGATTCAGGCACCGgacatgcttttctttttccatcagGATGTCTGGGATTAATCAGAGCAACACTGAGTGTTTGTTTTGTCCAGAATCTACAGTTCGACTAATTAGCTTGAATATGCTGAATTGATTACCAATAGGCAGGCTGAATATCATTTCTGGAGCTTGAGACTTGGATATCCTAAAGGTCAACACATCCACAAGTAGTTTTATGTCCAAGACTCACTGTTGCTTCAGTGAgaaatctcacctggatacacTAGATTTGCTGCTGAAAACATAAAGGCTGTCCTGTACTCATTCCAGGACTCTTATATGCTCAGTATATATCTCACCCAGGAGAGGACATGTTCTctttagagtctggttcctctcagggttCCTTCATTATGTCATCTCTGGCTTGTTGATCAAAatctacatacagtatagttttctgtaaagctgttttttctattattaaaagcgctacacaaattCAATAGAAATGAGCTGAATTCTGCTACagctgcctgtttttttttttttttattctgctttgAACAGGAGGGAAATGTTCCGTATCGGTCCACTTAGACACCTGCTGCACCTTTCCATTTGAAACAGGCGATTAACTCCGCTAGCAGGCCACTCCATTGGGTGTGCTTTATCCTGCATGTTACTGTTTCTTGCTATTTGCATTGCTTCCAGCTACAAAGATCTCCATCTCACAGGGAGAAACACACCACTGCCTGTCTTTTAATCATTCTCTCCTGCACTGACTCCAAtcttctgtttttcctcctAAAAACTGACAGTTTTTAGTATCATGCCAAGACCATATGCTACGCTCAGACCAGTTAGATGCTAGTATACCCTGGGCAGTGATCTTGGTTTATGACagttgactttttaaaatagatctttatgtaaggaataaaacacttagggtgtgctattctaggaaaataatcaacaacagggatTACCTGAAGCAGTGTTACTCTTatcaccccgaagttgattatttttcaattactGCTtgtccaaaagtgttttattccttccacagcaatttgccaacaataatttttaatttattactgaacgacattttcatttataattacttttaatgtaGTGGAACGCCTGTGAAACAAGTTGTTCACTTAGTGTTAAAGCGGCTAtaagcagtcattccctcactagcccctgttttatttctctcttctgAAGGTTTCTCTGCAGAAAATGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112524 lncRNA downstream 4448 6263752 ~ 6267790 (-) True G94746
TU112523 lncRNA downstream 12093 6259340 ~ 6260145 (-) True G94745
TU112522 lncRNA downstream 13206 6258115 ~ 6259032 (-) True G94744
TU112521 lncRNA downstream 14841 6256918 ~ 6257397 (-) True G94743
TU112520 lncRNA downstream 16051 6254913 ~ 6256187 (-) True G94742
TU112547 lncRNA upstream 104141 6385400 ~ 6386284 (-) True G94761
TU112768 lncRNA upstream 383596 6664855 ~ 6669607 (-) True G94975
TU112884 lncRNA upstream 720389 7001648 ~ 7002634 (-) True G95072
TU112878 lncRNA upstream 805252 7086511 ~ 7088041 (-) True G95066
TU113068 lncRNA upstream 1046229 7327488 ~ 7327703 (-) True G95227
XM_026927517.2 mRNA downstream 101119 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA downstream 101119 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA downstream 101119 6048476 ~ 6171119 (-) True gramd1bb
XM_026927522.2 mRNA downstream 101120 6048476 ~ 6171118 (-) False gramd1bb
XM_026927521.2 mRNA downstream 101120 6048476 ~ 6171118 (-) False gramd1bb
XM_026927410.2 mRNA upstream 195693 6476952 ~ 6680208 (-) True kirrel3b
XM_034305150.1 mRNA upstream 711877 6993136 ~ 7035230 (-) False ets1
XM_026927119.2 mRNA upstream 711877 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA upstream 711877 6993136 ~ 7017324 (-) True ets1
XM_026927116.2 mRNA upstream 715156 6996415 ~ 7035229 (-) False ets1
trnam-cau_19 other downstream 78091 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 1779499 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2098644 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2740547 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3503940 2759612 ~ 2768298 (-) True G93047
trnap-agg other upstream 584009 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 866685 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1161114 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2187042 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 3987218 10268477 ~ 10294823 (-) False ttc38

Expression Profile