RNA id: XM_026927437.2


Basic Information

Item Value
RNA id XM_026927437.2
length 7545
RNA type mRNA
GC content 0.42
exon number 7
gene id clmpb
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6197243 ~ 6281530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaacactgaaatcttTAAGACAGccgttctccaggaccaggttTGGGAACCTGTGActaatgccttttttttttctcttcaagcCACTGAAGCATATTTGCATTTTGGTGCACATGGTGTTGCATTGCTGACTGCTCGAAAATGTTTCCTCCGTTAATCACTAGCATGCATGCTGTGACTAAAATCGTGTCGTGACGCAGAGCGCGTAGAAAACGTGCCGTTGTTTCGCGCCCTTCCCGGTTAAAAGGGTGCCAGTCCGCAGTCCGCGCGCTTGCTATTCATGAATCGTGTCCCTGGTTGTCCCGAGAGCGTGCGCGAGAGCTTCGGACTCTAGAGGTCTCCATCCTCCTCCAGCATCCGCAGCCGCGCGCTCCAGTCCCAAGCATCAGCTCGTGCACTCGGACGAAAGGACAAAACGTGTTTCGAGGGAACCCGAGAGCTTGAAAGGGGCGCTTCGATTTCTCGAGCAGGACGCATGGAAGCGTCCCGGGGACGCGGCTTGGTTCCTTAAAGGCGGgaggaaagaagaagaggaggagggagatggaTTCGTCTTTCACAATATCTTAGATACGCTGTCCTTGGCGCGCGGGTGCTAcctacatttttttgtgtgcgTTCCCGCATCTGAAATAGTGTTGCTGAATTGTGCGGGAGCTTTGGCGCGCTGTAGCGCATTGAAGTGCTTTGTTTCCAACCCCAAAGGACTTCTGTCACCTCCGTGCTGTGCCGAGATGTCTGCCACATTCCAGACCTTGTTCCTCGTGCTGCTCAGTGTGCTCTCTGCCGGGGCTCAGACAGAAATGAAGAAGGTTGTTGGGGACAACGCGACACTGCCGTGCCATCACCAGTTCCGGCAGTCAAATGGACAGACGCTGGACATCGAGTGGATCCTACAGAAACCCAGCTTCAAACAGCGCGTGatcaTCACGTTTTTCAACAACGAGGTCTACACCAATGATAACGAGGCGAGCCGCCTGTCCTTCGCCGGAGACTACCTGAACGGAGATGCCTCTCTTCTGATCAGCGATCTGCAGCTGAGCGACACGGGCGAGTACCACTGCAAAGTGAAGACCGGGGGGAAGTACCTTTGGAGCCAGGTCAATCTCGTGGTCCTGGTGAAGCCGTCTAAGCCACGGTGTTGGATGGAAGGGCAATTGCTCAAGGGCAACGAAGTGAAACTGAGCTGTAAGTCTTCTGACGGCTCCGACCCCATCTACTATAAATGGGAGAGAGTTCTGGACAAGGGCAAAAGCGTGGGAAAGCTGCCGGAGTTCGCGCTCATTGATCTGAATAACGCGGGGATTGTGACTTTGAGGAACCTGAGTCAGGAGAGCTCGGGCATGTACAGGTGCACAGCCAGCAACGACGTGGGAGAGGAGAACTGTATCATCGAAGTTACTATGCAGTATGTGCGCAGCGTAGGTGTGGTGGCCGGTGCTGTGGTTGGGGTGTCCTTCGGtgtcctcatcatcatcctcatcatctgGTTGGTCTTCCgcaagaaagagaagaagaagtacGAGGAGGAGGAGACACCCAATGAGATCAGGGAGGATGCGGAGGCTCCCAAAGCCAAGCTTGTTAAACCCAACTCGCTGTCATCCTCTCGCTCGGGCAGCTCTCGCTCCGGTGCCTCATCCACCCAGTCCATGGTGCACAGCACCGCTCCCCGTAGCCAGCGACCCCGGCCCCCGGCCATCTGCGCCCTCAAGGAGAACGGTCAACCCCCCGAGTTCCTGCAGTCCTCCCCAGAACCGCCCACCACCCCCAAATTCAGGCTGCCTAATCCACCGGTGGGCCTGGCTGTGCCCACCACGGGGGTCCTGATGCCGCCGCAGAGCAAAGCCTTCCAGACTGTGTAGGGGAAAGAAAAAGATCCAGCAACATCCCAGGACAGGAAACACATACTGACTTGTCCAACTGCAGATATGTCAGCTAATGCAACTACCGTGTAAAAAAATTACGAGAGATAAAAACAAGCATAAGAAGAATTAATACTATAAAAAACTTAAATCTAAATGAATGCGTACATGAAAAATTTTAAGTGCTTGCCCGCTGCTGAActgtacagagacaaaaacatTTCCCTGTCACTCCCTAttgctctttctctgtctcttcatcttGTGCTTTCTGCCTGTCTGAAGTTACCTTatgttatttttatcattttattgtttcttttttgactTTGGAGGCATATTGAGCGACGAGGTGGAAAGATTTGCCCCAAGTGacgctttatttatttattgaaagtGAAGGGGCAGAGAAAGCCAGGGCAAACTGAGTTTATGAAATATCAGGGATGACGGGAACAATGAAAAGAAAGGGAAACAACAGATGACGCTCGCCTCATAGAAAAGACTGGAAAGATCGTCACACAGCCTTTCTTTGTGGAATCATTGAAAGGGATGAGAGAAGAGAATCAAAATTCTGGTaattcccagaatgcagtgcaggcAGTTGGATATTCAAAATGGCACCTTGTGACTTTAGAAGCATTTCCAGTGACCATACGTACAGTCCAGCACATAAAGACATGAATATCACATGCATTAATGAAAAGGATAAGATTCGGTCATAATATTTGGCAATTATTCAGTTACCGCTCACTATGTACATGTTTAACATACAACACTGTGGGACAAATTCATCTATTTCACTTGTAATGTATgtatggtgtcctgtgatggactagtgtCCCATTCAGGGGCCTTGCTCCCAGTGTTCTCGGGATAGGCTCTCAATCCaacgtgaccctgaccaggataaagcggttactgaaatcgatgaatgaatgttttttttttttttttttttttttttttaacatctatACACATACGCAACctcattatttttcagttttacactTGTGGACGATGTTAGCCACTATTGCTACCCACAGGTGTCCTGCGCTCACGCTCACTAAACTTTGTATTCTCATTgctttattttgcattatttacaaaattactGATATAGGAAATCTGGAAAATTGAAATAGGAACAATCTGAGTGGAATAttcctgaatgtgtgtttaaccCATGTAGCCATTGCTTGTATTTTGTTTCCTTCCTAGAATATCCAATGGTACTATTGAAGCACTTGAGGCACAAATaactgaatataatataatatcacgCTGTTGTTGATAAGAGATCATAGTGGCAGGAACTTATCTACAGCAACGGTGTGCATCAAGGTTCTCCTTTAGGacctttaaaaatgtgctgtaacAGGACAACTGCCTCTTTGCATCAGCGACTCGTCGGTTTCTCTGGACAGCACTGCCACAGGGCCGGTCATTATCCTCATCCCGGAGTCCCTCAGAACCATGTAGGTGCATTTGAACACACAAGTAGCCTATTTTGTGTGCCTTTGagagtttcttttttctatcCAGTGCACCTAGTGACCCAAATTTCAGCCTTTTTGTAAACACCGGCCCTGTGCAGGCTGGACGATGAGGACAGGATAATGAGGCTGGACAATAAGGCAGTCCCTTTCATCTAGAAATAGTGTACAGTACACACAATgttttatattgtacatatgaatagatatacacacaatatCCTTTACATTATTGGGCGGTGGTCAAGATAAAATGTCATCGATACTGTAAATGAATACTAAAGCATTTTTAAGGACTATTAGGAGATCAGTCTACTCTGGGAGTTACTAGAACTAGTCTCCTTGTTATAAATAGCAGCTTCTCCCTCTCACTGTCTCTATAGACTCATTATAATCCATATCGATTGTTCATCTGCACATTTCGAATCAGCCTAATtcaatttttcaattcaattacatttgtagtgcttttaacaacagacactgTCAGCtctacagaaatccggatgtagatttaggtccctaatgagcaagccagaggcgacagtggcaaaaataaaacccagataaggatgaggaagaaatcttgagaagaaccagactcgaAAAGGAACCAGTCCTCTTCTGGGTAacactggatagtgtgattttaaatcattacactaTAATTCTCTGTGATTtgtcagagttttttttttttttgtctttctgtgttttttcaaGCAGAGGTTCTCAAATTTTTGGTagactttaactgtaaaataaattccacagaccccctcagtacagatttagttcattaacattatttcaATGTGATCAATAATATTTTGCCTATATTTTAGAGCcatagagggtttttttttaactggacaAAACACATTCAGTCCCAgctaacattattaatatgcaggggtggaaaatacttgagtaattgtactacattactatacttaagtgTTATTAAGTTAAGCCTTATTTTTTagtccttacatttttatttagaccttcaaagtacttgttacaaatctcaaaggttctctcatccagccaatgactTTACACTAACATCAAATTCACGTCGTGTCATTAATATAGATAAAATTCAGTGTACGTAATTAGTGCTATAGCaacctgtatgtgtgtctgaagACGAATAATCCACTAGGATGAGTggccctggccctacctcagtaaaatgttttaatatgctGGAGTAGGCAACCTAGAAAGCATGAACTCCATATAATTTGAAAAGGAATGTTGAGGTAAATTTCACAAATTTGATAAACATTAACTGACTATATTTACCCAAATGAacatgttttctttgctaatggcAGGTTTGACTAGCATCGagtccagtagctaacataactgGCTAAGCAGCAAGTCTAATTCTAAGTCTAATATGCAGcattagtcatgcatatgagcagcaaacttacagagattgaatgatgttttcaggcaaaatggcatagttgctttaaaatgaaaatcaaagtAAATCTAAAAGTTCGTTTTCACATTACCTTTAAAACATTGACTTAATTTTATTggttaaaatcatttattttttactttttaatacttttctACATTGCTACAAAAAAGCAACTTGACATGAGTACTTCTCGGTACATTTTCCACccctgtttatatatttattacaggtttatatttatatatttttttataaatatataattccggatccaccgtgacaCTGAtgaggataaagtgcttactgaagatttgtgtgtttgagttatGTTTGGATTAAAGCCATTCAAATCAAGGGACCATTCAAATCAGACTATAAgaccataataataaacataacaaCTTTGCTactggtgggttgtgatttctaAATACATATCTCagtaactgaataaaaaatcaTGGACCCCCCACCCCCTGACTTGAGAACCACTGTTTTAATCAATCCATCTTCATCTTTAACATTCCTGTAGAGCTGTGTATGTCATCTAGCAGATTGCTCTTCTGAACTTGATTTCACATCTAACCTTTCTCCATaattatataacacacacacacacagcagtcttaCTTTTACACATGTCCACACACTCGGCCGAACAatatctatctctgtctttctcacacacacacacacacacacacacacaaacacacacaaacacacacacgtgtacttGCTTCCAATTTAAGCGAGTGCTTGCAGGGCGGTGTTGCTGGGTGCAGTGGCATCACTAAGTGTGATGGATGTGCTGTCAGCAGGGTGGAGGATGAAGGATGGAGCTGAGCCAGCAGGGAACACAGGCAAGGCGCTGCGTGGCTTTAACCCCACTCTACTACACCACATCCACACATCAAACCACTCCACACgacaaagtgtgtgtttctctcaatCACCAACGTCCCTCTCTGTGTGCCCAGCTCATCATCCATTTATGGTACcatttatgagtgtgtgtgtgtgtctgtgtctgtgtgtctgtctctgcacCATCACTTGGACCTGAGGAAATGAAAACAAGCTGCATGTCCTCCAGCTGTTCTTCTCATCGGACTCTCTGGGTCTCAGGTGGCATTTCAGCCGGTTTATGAGCCTCTGTGCCCAGCGGCACCACATTTTCACACTCTCCCACTCATTCTAGCATCAGGAGCTGTCGTGCAAACTCCAAAATGGCTCGAGTGGTCTTTAAAATCATATACGACACCATCATGTGATGGAGCCAGTagagtttttaaaaagacaCTCAACAATGCTATTTTCAGAAAGGGAGATGATTACACCCAAACTCTAGAATCCCAACACTAGTACTAGTTAGTAGTCCAAAGTCTCTCTGTTGAAACCTTTTGACTAACCCTTTGACTACTCAATGATGGATTCTGAGTCAGTTTGGTTAAAAGCACCtgctaaatgaatgaatcttgTGCtgcggcctgggaaaacccttcacactggcacatgttgacatttcttcCTTTTGCGTTGtccttttgcatgtatctcaatctaaagtaaagttctagcatttttgacatctgaaaaaaaggagaaaagtgtgtttaaagatttcattccaattccactgaacaATGTTCTGCCCACATCTACCTAATATATTTATGGGAAAAAAGGACTGCCAAATTGTAAAGAATTCTATGTTTATGATGTGAAATGATTTCTTACTTTGATTAGGAGCATCGTCCACATCAGtttgtctcatcacctgaagcAGGAGTCTCTCACGGGgtttaaacacgagcctcatcatcatctcctcaTTCGACTGATCTCTATTCACGCTAACATCAGTGAGGAAAtcatcactgattcattcactccattctctcttgttctctcctaaatttcttgttaatgatttttttagcacattgacacattttaaaaaatttttccaCTGTCATCTGTAGTGTGTAAGTGCTTTCTatattttgatgatgatgatgatgatgatgatgatgtgatggtacAGGGCATCgaagacattttgacagccactATCTGATCACAAAATTAGGCAGACTGCCTGACTTTACCTCTGCATTTGTTAAACGGATCCCTTACACAACGTGATCTTTGCAGAAAGACGCCAAGGCAGGGTTAGAAAGTAGCCTAAGTACAAATATTAGCAATAtccaatgggttttcccagaccaccacacatttGGCAGCAAATTTATTGCAGGGGATAATgggtttgattaaaaaaaatttcccagATCCATTCAAGCTGATGAAAATTAGTAATACTGTAATCCTAAGAATAATAAAAGGAAGCACTGTCTCTTAAAGGGAGATGAAGGAAATGTATAGTCTATGGAGCAGATATTGGGTTTGCTTTACTTTGGTGTTTCCACCTGTATTCCACCGAGTCCCTTTAAATGTGTCACACAGAgtcgtctgtctctctctgtgtttctttgaTTCAGTTTCTGTTCATTTCAGACTTAGAAATGTGTGCAGACTGTAGAGGAGGGAGAGTAGATGTCATTACAATTCCCCCACTTTTCTCAGCTCtagctttattttttctctccagaTCGGTGCATTTGTTTTAAAGGCGATCCATTCTTGTAAATATagccatttaaaaatgtatatttttacgGATTCTGAGATATTACTACTTtgtttgcaaataaaatattcaacaagTTA

Function

GO: NA

KEGG:

id description
K06789 ASAM, CLMP; adipocyte-specific adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112372 lncRNA downstream 166568 6029309 ~ 6030675 (-) True G94608
TU112371 lncRNA downstream 168008 6025360 ~ 6029235 (-) True G94607
XR_004578356.1 lncRNA downstream 283650 5911768 ~ 5913593 (-) True LOC117597596
TU112144 lncRNA downstream 410812 5713843 ~ 5786431 (-) False LOC113534829
TU112194 lncRNA downstream 493452 5703581 ~ 5703791 (-) True G94441
TU112547 lncRNA upstream 103870 6385400 ~ 6386284 (-) True G94761
TU112768 lncRNA upstream 383325 6664855 ~ 6669607 (-) True G94975
TU112884 lncRNA upstream 720118 7001648 ~ 7002634 (-) True G95072
TU112878 lncRNA upstream 804981 7086511 ~ 7088041 (-) True G95066
TU113068 lncRNA upstream 1045958 7327488 ~ 7327703 (-) True G95227
XM_026927517.2 mRNA downstream 26124 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA downstream 26124 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA downstream 26124 6048476 ~ 6171119 (-) True gramd1bb
XM_026927522.2 mRNA downstream 26125 6048476 ~ 6171118 (-) False gramd1bb
XM_026927521.2 mRNA downstream 26125 6048476 ~ 6171118 (-) False gramd1bb
XM_026927410.2 mRNA upstream 195422 6476952 ~ 6680208 (-) True kirrel3b
XM_034305150.1 mRNA upstream 711606 6993136 ~ 7035230 (-) False ets1
XM_026927119.2 mRNA upstream 711606 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA upstream 711606 6993136 ~ 7017324 (-) True ets1
XM_026927116.2 mRNA upstream 714885 6996415 ~ 7035229 (-) False ets1
trnam-cau_19 other downstream 3096 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 1704504 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2023649 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2665552 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3428945 2759612 ~ 2768298 (-) True G93047
trnap-agg other upstream 583738 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 866414 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1160843 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2186771 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 3986947 10268477 ~ 10294823 (-) False ttc38

Expression Profile