RNA id: TU112512


Basic Information

Item Value
RNA id TU112512
length 1544
lncRNA type intronic
GC content 0.42
exon number 1
gene id G94734
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6240617 ~ 6242160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGCATAGCAAGTCTTTAGGGAACAGTAGATACTATATAGTATATCTACTATCACATGTTTTGACTCACAGTGCTTAGGATggacatcaacacacacacccgaaCACACATCGCCCTGGATATACTCATAGCCCAAGGCCATCCTCATATCAGTGATGATAGGGTTATGGAAAAACTCTTCTCTTTGAACATGCAAACCCTATTAGCACTAACTCACATTGTCATTTTGATGCACTTCAAATCGGATTTCCTGCTCCGAAACAGACATTTCCTAATGTGCACTTGAGCTGggatattgttatttatttgcccGCTCTGTAAAATGGTggagagggagagcgagagagaaattGCTTGTCAGTGTACTGCAGCTTTTCTGGGAGGAGGTTATTCTTTAAGTTCGGTGTTAGAATTGTGGAGCTGAATGCCCATAATTAATCATCAGACAAAGCTCTTACATCAGCAGAAGCACAATCTTAGCCTTTTTGGTTTCTTCTGAATAACAGAAGACCAAAGTTGAAGGACCAGCAGCTCCCACACCTTCGACCTGCCGCTGCACATTGATCCGTTTTAATTAAGAGGAAAATATTGCCCTCGGGACTGGTGCATGAGAGACAAAGCACTTATCATGTCTAGCCTTAAATAAGAGTCTACATTGTGTTGCTAAAAATAAATCCCATTTATTTAGTCCTCGAGGGCATACTGGTTCATGGCTCAGAGGAGGCCTGCTCAACACTTCTTTCTCTGATTTTCTTTCCATTAtttatctctctcactcaaacTGTATTACAGACACTATATTGAGAACTATATTAAAATACGTGATATATCATTTTCATAATGCAGCATATGAGATTGAAGAGAAACGAAAAGCAGAGCAAAAGCAAGACTAGTGTATGATGGAGACTAAAGAAGATATAGATTGACTGAAACTTTTTCAAGCCTCATCTGCACACCAGCAACTTCTCCTCTTTAATGGCAAAGAGCCTCATTTGGTGGGAGACAAACAAAGATCACAGAGAAGCACAAACATATTGACTTGGTGTAATCCCTGGGAAAAAATCTAAGAGCCAGGATAGATGAGCGTAAGGAAAATAGAGGAGGAGATGTGGTGTGCAGGAAGGAAAGCTGTATCGAGTCCCACTGAGTAGACTGATTAAGGACTAATAAAGCTCTGCGTGTGTTGTGGGAAAAGCGGTAGCAGTTAAACTCAGCAGGTAGGGAAATCAGGAGTGCTTCCTTGCATACGCTTTGATGGGAACCACATGTGTTTCCTTTCTTCTGCTTTTACAGCACACCACAAATTCAGTCTAATCGCTTTATATGAGAGATTCCCGATGGAGCGGACACGCTGTTGTTTCACTAGGGATTCGTCATTTCAGCTTGCTTCCTCGAGACACGAGTCCATTCAACATCCAAGGAGCTCATGCATAAGCTAATGCAGTTAGCCCTCCATGTATCAGGTGAGGGTTAGATATTAGATAATTATCAGATAATCCCAGCATTGGAACTGCAGGGATGTTGGAGGGAAACAGAACAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112511 lncRNA downstream 91 6240201 ~ 6240526 (-) True G94733
TU112510 lncRNA downstream 869 6238681 ~ 6239748 (-) True G94732
TU112508 lncRNA downstream 7378 6233005 ~ 6233239 (-) True G94730
TU112506 lncRNA downstream 9452 6230856 ~ 6231165 (-) True G94728
TU112372 lncRNA downstream 209942 6029309 ~ 6030675 (-) True G94608
TU112513 lncRNA upstream 429 6242589 ~ 6243616 (-) True G94735
TU112514 lncRNA upstream 1571 6243731 ~ 6244083 (-) True G94736
TU112515 lncRNA upstream 2406 6244566 ~ 6245381 (-) True G94737
TU112516 lncRNA upstream 3367 6245527 ~ 6245789 (-) True G94738
TU112518 lncRNA upstream 5777 6247937 ~ 6249241 (-) True G94740
XM_026927517.2 mRNA downstream 69498 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA downstream 69498 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA downstream 69498 6048476 ~ 6171119 (-) True gramd1bb
XM_026927522.2 mRNA downstream 69499 6048476 ~ 6171118 (-) False gramd1bb
XM_026927521.2 mRNA downstream 69499 6048476 ~ 6171118 (-) False gramd1bb
XM_026927410.2 mRNA upstream 234792 6476952 ~ 6680208 (-) True kirrel3b
XM_034305150.1 mRNA upstream 750976 6993136 ~ 7035230 (-) False ets1
XM_026927119.2 mRNA upstream 750976 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA upstream 750976 6993136 ~ 7017324 (-) True ets1
XM_026927116.2 mRNA upstream 754255 6996415 ~ 7035229 (-) False ets1
trnam-cau_19 other downstream 46470 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 1747878 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2067023 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2708926 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3472319 2759612 ~ 2768298 (-) True G93047
trnap-agg other upstream 623108 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 905784 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1200213 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2226141 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 4026317 10268477 ~ 10294823 (-) False ttc38

Expression Profile