RNA id: TU112520


Basic Information

Item Value
RNA id TU112520
length 1275
lncRNA type intronic
GC content 0.38
exon number 1
gene id G94742
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6254913 ~ 6256187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGTTGCAGGGGGATATTTGACAATTTGATTAACtacaatattgattttttttacatttgatacagaaacattttaccacattttaatgaaattttacagGAGGCCAGGCTTCccatgtagtcttaaagcagTCGCCTGGGCCAGACGCAGTTTAACCAGCAAATAGCCTTCGCCTGTTTGCTAATCAATCGCATCCTATTAACTTTGGCCCTACTTATGAGGCAGAGACAGAAAtggaggcacagagagagaagcCTGGATGACAGTTGAGGTTGCTGAGTAGCAGTCAGTGTGAGTCCGAGCTGAGCCAAGGATTATAATTGAAATGGCTGATAAGGAAACGATACAGTGGCTAGTGATCAAAGAGATTAAAACAAACCACCACAGAGAGCAAGGGAATAGAGAATTAATTATATTTCCGAAGATGACGAGAGCTGACAGATAAAACACTGAGGACTTAAAAGCCCACGTTATATAAAGTGAATCCATGTGTGACTTGATGAACTGTAAGAAAAGTGATTCAGATCATTAGCCGCTGTTTTTAGTAGATCTCTGTGCATTTGAGCACTCCACTTTGGAGCTGTGCGATTAGACCATTTTTAAAGAACTCATTTCTTTCAGACTATTAACTCTTTCAATGTAATAATGCTTAAATAATGcttgaattttaattttgcGTTTGAAAGGGTTGCATTCATAACTGCATTCCAACATAAATCTAGATTgcttataaaatgaataattctgtAATTTGATAACCAACTTGCATTCAGTACACTGAGTGTGAACTCAGTGTTTGGAGTGTTTCAAATGGAGCACAtagagcaaagcaaacaaaagatAAACTCACACTGTCCCTAATTTGCCAATTATTGCCAtttcattattcagttatttttttcaatcagCGTTAAGCAGTCAAATGTGCTTGCAGCTGGCAGAAGTAGTGTGCATACAGCCGAAATGTGTTCAAATGATGATGACACCTCTACTGCAATTCATCAACATCTCAGCTAAATCACTAAGGACAGCAAAACACGAAACACAACATCTGCAGAGCAACAGAGAGTGTTAGTAACACAACCTTGCGAAAGCTTTTAGTTGCATAGAAACGCAGTGAAAACTGCTGCAAACTGTTAGCGGGAAACCCCGGAGAGGTGGGTGTGTATTAAAACAACAAtgctttttgaaaattttaGGCACATAGCCTAGTGTGAACACAGATGCTCAAATTATGTACTGTACAAGTTATAAACTAAAATCAAAAGCTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112519 lncRNA downstream 4040 6250005 ~ 6250873 (-) True G94741
TU112518 lncRNA downstream 5672 6247937 ~ 6249241 (-) True G94740
TU112516 lncRNA downstream 9124 6245527 ~ 6245789 (-) True G94738
TU112515 lncRNA downstream 9532 6244566 ~ 6245381 (-) True G94737
TU112514 lncRNA downstream 10830 6243731 ~ 6244083 (-) True G94736
TU112521 lncRNA upstream 731 6256918 ~ 6257397 (-) True G94743
TU112522 lncRNA upstream 1928 6258115 ~ 6259032 (-) True G94744
TU112523 lncRNA upstream 3153 6259340 ~ 6260145 (-) True G94745
TU112524 lncRNA upstream 7565 6263752 ~ 6267790 (-) True G94746
TU112499 lncRNA upstream 16051 6272238 ~ 6281259 (-) False clmpb
XM_026927517.2 mRNA downstream 83794 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA downstream 83794 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA downstream 83794 6048476 ~ 6171119 (-) True gramd1bb
XM_026927522.2 mRNA downstream 83795 6048476 ~ 6171118 (-) False gramd1bb
XM_026927521.2 mRNA downstream 83795 6048476 ~ 6171118 (-) False gramd1bb
XM_026927410.2 mRNA upstream 220765 6476952 ~ 6680208 (-) True kirrel3b
XM_034305150.1 mRNA upstream 736949 6993136 ~ 7035230 (-) False ets1
XM_026927119.2 mRNA upstream 736949 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA upstream 736949 6993136 ~ 7017324 (-) True ets1
XM_026927116.2 mRNA upstream 740228 6996415 ~ 7035229 (-) False ets1
trnam-cau_19 other downstream 60766 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 1762174 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2081319 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2723222 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3486615 2759612 ~ 2768298 (-) True G93047
trnap-agg other upstream 609081 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 891757 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1186186 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2212114 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 4012290 10268477 ~ 10294823 (-) False ttc38

Expression Profile