RNA id: TU112524


Basic Information

Item Value
RNA id TU112524
length 4009
lncRNA type intronic
GC content 0.37
exon number 2
gene id G94746
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6263752 ~ 6267790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AactgactctgtaaaaaaatcttttttgcatggtattttttatatgttaatataatatatattctcCATTCCATTCAGAAGTGGATTTATCATCATTTatcatgtttatttagcatttagggaaggagtctccagtatcaacactttgtaacagtcagaggtaaagctgtaactttaatatttcagacacaagactttgtggtttctggaaATGCTACATTCTTTTAGTTTCAAtatcaaaagagagaaaacagagaggctggtgaaggaatgactgtttataatgataacaggaagtacATTGTTTCAcggctgttccacaacattaacggagtgtaaaatatatatatgtatgtctttctttaattaataaaaaaaattataatctttGGCAAACCGCACATTTTCAGTGTGCCTGTGTTTGTCTCGTTGTTTGTGTCAGTTGGGAAACTAATCGAATTCATACATTCCACAGAAAAGCTCAATGTAATtagtctctgtctttttctcctccCAGCTGCTCTCACCATTCCTCAGTGCCCCAGAGGATGTGATATATCATGTCTCGGTTCATGTGATCTGGATCAATACCCAGAATTCAGCTCTGTTGTTTACTGTGACATGAGCAGGCCTCGGATAGGACTGTTTCCTCTTCCAGGTCACCTGGAGGGCATGGTGACAGGATACTAAAAAGTGCCTCTGTTAGCCACACCTGTGAGCATGTCCATCACGGTCAAGTGAGAACAAGACTCAAGCAACtcgaaagtgtgtgtgtgtgtgtgtgagatttcagTTGGATTGGTTCACATCCCTTTAACAGCTACTTATAAACACATAGCATTAAAGTAGCAGAGCTTTTCTGAATTATGTTGCACAATCCACATTGacctctttctctttgttcGAGCGAGTGTATCGAGCGTTCTGCGCATGTCTACGTGTCGCTGCTTCTGTCCTTTGGAGTTTCATCTGGCTAATGAGTGCTCATTTTCTGCCTGTTTTGGAAGATCTAACAACCTTAGAGAGGACTGATAAAGCAAGTCGATAGCATGAAAACAGCAACACGAAGGATATGGAGAGAAATCAATTTTGaattttccactagattttaccGGTGCTCGGGATATGACAGGCAGTACACTGTTTTGCCCTCTGCTAgcttttaacacacattttatgCTCTGTACACTGCAATAAGTAGCCTTATAAAAAGCCTTACAAAGGGGggatatgatgatatatttgTAAGTTACAATGAAACACTTCACTATTCAGAAGAAATTCTAACAATGTGCAacagttttaataattaaacatgcaGTTAGCATGCCAAAATTTAGCCATCAATGGCACAATgtcacaaagacacacacaaattagaGCTTAAGAAAACCAAAATGGTTGACAATGATCAAGTCCTATCTCAAGCACGGTTAATGagatatcatcatcatcatcatcatcatcatcatcacaatgcACTTCAAGCAACTGTTGGAGGTGGTGGACGAATCTTTATGCTAACTGTGCACTCTTCACTCCTTACCTCTTTTTCCCAGATGTGTATTGTCTTTGTTTCTCCTTCCCGTTCCTGGCAGTGTTTCCCCACACACTTTGTCACCAACTATTGATTCCACTCACAGCATTAGGGAGCTGGAGAGAAAAGTGTTTAACCCGTCCTGTCCGGCGGGCGAGCATTTTGATTTATCACACTGCGCGTTATCATTTGAATGCACAAGCACGCATGGAGCTTGTGGCAAGTGTATCCTGGAATGCAAAACCTATGTggtgcttctctttttttttctgtctgagtgtttactttgtttttgtgCAGGCTGGAGTTTGTCCTAAGTAATTTCAGAGATCAGTCATATCAGCCTGCTATTGTCTGCCATGCTGCTAGCTGATTGAGACGAAAAACTCATTACAGGGATTCTTTTGTGCCACTGTGTGGTTTAGAGTGAAGGGTAAAAATGAATGAGGTTTACTGGAGATTTATCCTTTTACAGTGTCTCAGTACTGGACTGTTCTGGCTGTACCAGGGTTGCCAACTATCACACGCTCACACCAGCCAAACACACTGTGTACTGCATGCCAAATTTTGAAAAGACCCCAATAAAATCTCTCTCTGATGAAGCAAATCATCTAAATTTGAATGACAAAGCCTTTATTTTTTAGCATGGCAAACTGAGATTGCTTTATATGACAGATTGACAGTGTATTGTATTGGGCAGCAAATTCAGTTTGTGCTGATCCAGTAACTATATTAAAGCGAAAGATGGTATAGCACAAGCCACATCATGGCTCTGAGCAGCAATagcagtcagaggaaaataaagCATGTTATCATTTCAGTGATATGCTAGAGCGTGACATTGAAGGTTTGTTGGCAGTTGTAATATAGAGTTGCTAATTATGTTTGCATATTGAAATGATCCTGTCAAAAGAGGACTAGGGTCTAACTAAcaacacagtgctgttaaattctcaaatcagatcagatgttgattaattttctataatagcagctcagACTGTAATGAACaatacaaggcaaatcacaggtttattatttAGTACAATAGTAGGatatttgacattatttattgcaATAGTAGGAactttcacattatATAGTACAGCAGTAGGAAAGTTAACACAGTATTTACAGCTGTTGTAAGAGATTTGACATTATTTAGTACAATAGAATGaaatttcacatatttaatataatagtaGATAATTTGACATATTTAGTACAACAGTGGGATAGTCAACAAAGTATGTAGTATTGTAGTAGGAAATTTGAAATTATTTAGTACAATAGAAGGAAATATGACATTATTTAATACAGTAGTCAGAAATTTGATATAATAGGAAAATAGGAAAGTTCACATAGTATTCAGTATGTTACTaggatatttaacatttactacAATAAAAGAGAATTTGACGTTATTTAATAGAGTAATAGATAATTTACATATTAGTACAGTGgtagaaaatgacattttgtaatACAAGAGTagaaaatttgaaatattttgtacGTTAATAGgatatttgaaattatttagTTCAACAGTAGGAAATTTAACATATTATTTAGTGCATTAGTAGAAAATGTAACATATTTAGTACCGTAGTAGGAAGAAATGTGATATTGTTTAGTATAATAGCAAGAAAATTATCTTGTTATTTAGTAGTAGTAAGAAAATGGACACAGTATTTAATACATTAGTAGgaaatttcacatatttattatattagtaGGAATCTGACTTATTCATCATTACAATAGTAGGAATTTTGACATTAATTGGTATAGGAGTAGGAAATTAGACACTCTTTAGTACAGTAAAAGGAAATTGCACATATTAATTAGCAGATTAGGAAGGAATTTGATATTATTTACCATAGTGGTAagacattttacatattatttagtacagtagtagacTTGACATAATATTTGGGCAATAAGCTTTTTCCAACATATCTTCTCCACTGTCTTCTTACAAATACAGACAATTGTGCAACTTTCCAGAGAAGACATGAGTCAATGGATGATGATGCTCATTGTTCCTTGACTCTAGTACTCTGACGTCAGCTTGGTGCATCAgagctccaacacacacatttccttgGTCTCTTgatctctctgttttttttttgtcccaaaCCCTGAACATGTCCAGTGGGGGAGTGGATGTGATAACCTTGTTCTGGATGAAGGATGGGGACACAAACAGTGGTTTGGAAAGTGTGCCCCTCCCCATCTAATGCAACAAATGTGTGAGTCAGCAAGACGTGGGCCAATCAATCTGTTTACTGTGGCGGAGAGGAGCAGAgttgagaggagaggagaaatgaTTGATTCATAGGCAACCTTGTCCTTTGAGCAAGTTTGTGCTTGtgtacagggaaaaaaaagcaaaagcaaaaaaggATTTGTGTTTTCATCAGTCTGCTGGAGTGTGTACAATATcagggcatgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112523 lncRNA downstream 3607 6259340 ~ 6260145 (-) True G94745
TU112522 lncRNA downstream 4720 6258115 ~ 6259032 (-) True G94744
TU112521 lncRNA downstream 6355 6256918 ~ 6257397 (-) True G94743
TU112520 lncRNA downstream 7565 6254913 ~ 6256187 (-) True G94742
TU112519 lncRNA downstream 12879 6250005 ~ 6250873 (-) True G94741
TU112499 lncRNA upstream 4448 6272238 ~ 6281259 (-) False clmpb
TU112547 lncRNA upstream 117610 6385400 ~ 6386284 (-) True G94761
TU112768 lncRNA upstream 397065 6664855 ~ 6669607 (-) True G94975
TU112884 lncRNA upstream 733858 7001648 ~ 7002634 (-) True G95072
TU112878 lncRNA upstream 818721 7086511 ~ 7088041 (-) True G95066
XM_026927517.2 mRNA downstream 92633 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA downstream 92633 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA downstream 92633 6048476 ~ 6171119 (-) True gramd1bb
XM_026927522.2 mRNA downstream 92634 6048476 ~ 6171118 (-) False gramd1bb
XM_026927521.2 mRNA downstream 92634 6048476 ~ 6171118 (-) False gramd1bb
XM_026927410.2 mRNA upstream 209162 6476952 ~ 6680208 (-) True kirrel3b
XM_034305150.1 mRNA upstream 725346 6993136 ~ 7035230 (-) False ets1
XM_026927119.2 mRNA upstream 725346 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA upstream 725346 6993136 ~ 7017324 (-) True ets1
XM_026927116.2 mRNA upstream 728625 6996415 ~ 7035229 (-) False ets1
trnam-cau_19 other downstream 69605 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 1771013 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2090158 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2732061 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3495454 2759612 ~ 2768298 (-) True G93047
trnap-agg other upstream 597478 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 880154 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1174583 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2200511 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 4000687 10268477 ~ 10294823 (-) False ttc38

Expression Profile