RNA id: TU112768


Basic Information

Item Value
RNA id TU112768
length 4730
lncRNA type intronic
GC content 0.44
exon number 2
gene id G94975
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6664855 ~ 6669607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAATTGGACATGTTTGCCTGACCGTGGAAACAAAAGCGTCTATTTTTATGAGCGTTAATAGCAGGATGCATGGTGGGAGATGAAGGGCTCCAGTTCTAGCACACCTACACGTCTCTCTTTGCGTGATTTTATGGTCCTGATCTGTTGCAGCTGCACTTACAGTGTTGGATAACATTTCTCTCTGAGCCAGTTGGAGTATTTTCTGCACCAGGAAATGCCAAACATCGTGCAGTATGCAAAAAATGGCCTCATGCAGTCCAAACACTGTCATTCAATTAagttttgattttcttttgaCCTGTAATATTCAGTATTCTGTCTGTTTACCTGTCTCCCTGTGTAGGCATgcttgtataaatatattttctttctagCATTTCTGGAGCTTGGCTTCAAGTGCAATTTAATACTGTGGTGGTACTTCATGCCAGTGTGGCAGCGAAAAAATGCTAATGTGCTATTGGGAGCGGTTAAATGATTTGCTATCCTTTCATGCGCTCTGGCAGGGGCTTTCGATCTGGCTACCATCCCAGGCGAATAGACACCGGTCATTGCTCAGTCCTCGGGGGACATTAGAGCAAATCAGCACATCGCGCAGGAGCCGCTGGCACGTTGCTTCTGGGCTTTGGCCTCGTCCCAATTCCCAGCAGCCCGAATGTGCTCTCCTACACAGGAGCCTCTGCTTAAGCCAAATTGAATCAGCTCCTTCGTGAAAAGGGTTAACTCTGCTTCTATAGCCCTGCATGCGCATTACTGGATATAGAATGAGAGGGCTCAGAAGGGGTCTCGTAAAACACTGATCATAAAGCCCGACTTCAAGATTGGATTAAGAGCAGAGTGCCCCTTCCTTAAAAGGAGTGTAGTTTATTAGAGCCTTATCTTAAGTGATAATGTTACCATGAAGGACTGTAGCCATATAAAAGATATGGGCCCATGGCAGAAAGGGAGACGATGATAGGCTCTGAGTGCAGGAAGAAAGCACTTTTATTGCCACAGAGAAGGAGATGTGGAATCAGATGGGAGCCGTGGCTTCTGCTATGGCATGTGCTGAACTGATGATGGTGCCTCTACTTTGAGAACGGAGCACTGTggtttgaaattttcacagtatgataacctagtctaacaatattatggaaaaaaaatctaaatcattGTACGAAGGTAGGTATCTAGGCACATCCTTGTatacaatataacaaaaaaaaggaaacaaaaagataGTGCTGATTGAGTAAAGAATGGGTAGACGATAATAGACGGAAAACTCATTTTATttggtatttttaaaaagtcagtgGTGAGGAAACCTTCTGGTCATACACTGTGACTAACCAAGAAACTATGACACTATAACAACTTTATTTGCAAATGACACGTCCTGGTTCACAACACATTGAAACACTGAACTTTTTATAGATTGACCTGGTTGTAAACACCATTCAGAACAGTGCATGATCTCTAAATGTGGTTTGAAGAAAACACAAGTCTGTAAGCTTTATGTTCTTTGGGAGCGTTGGGAGAACAATGATGTGAAAAAGCTGAGTCAGACAGAAAACTGAAATCCTTTGAAGAAAAGAACCAGTATCTGGGAATTTAGAGGAAAAGGATGTAAGAGAAAAAAGCTGTTTGAGGTACTTAAGCAAGCTAACAGCTAACAGTTTTCCGCAAACCCTccgagggatttttttttcccttcccgAAGGCTGTGTTATCTAATTGTGGTCTGGTTAGGTACATCAGCTCACATAAAAAGGTAAACAGAGCTATCTTAACACAAAGCTCGGGAAGAGACGGAATGGCGAAGGGATTGCTGAGACAAATTAAGGTTATCTGAAAACCGCCAAGGTAATCCTCACCATTGATGTCTGCATGtctgcaagtgtgtgtgctcCTGCAAATGGTAATGAGATTACGCCACTCATTCTTTGTATGCTAATTTTATTACCACATATTGTTTCCATATCTGACACGTAACAGCTTTAGCCCGTGGCTTAAAATGCCTTTTTCATGGCGCCCCGGCTGTCTTTTATGTTACTTCTGCAAGCTAGGCTTTGCGGCATGGATTGGGGGAAACAGTAATTCGTGTTGATATTTTGTGCCTGCTGCAGCATGGTGAAGCGCTCAGCCTTGCGTGGcctgctgatgctgatgctgctgaCAGTGAAGGCTCGCATGGAGCCGCACTGCTTTGCGATCGTAGCTGACACTAACACAGCTGCTGTTTAAAAATGCAGGAGGCCCACTCGATTTTAATCACAGTTTCATGTGACACGAGAGCTTCCAAGGTGTCACCACCCCTCAAACCGAGTTCCTTTAACCCACAATGATGTTACAAAGTCTATGGATGTCAACGCTGTGATTTATTTAGGCATACAAAAAAGGCACTTTTCCAGAAAGATATAAGTAACTTGGAGTGGATCAGGGCAATCATGCTTTCTGTTAAAGCCTCTCTACAGGTGGACATCCTCCATGTAACAAAGCTGATTCTtgccattcatttattcttgtTATGCCTCTCTGTTCCATGATATTGACATGACAATTCaccttctccatctctttctgtgCCATGGCCTATAAATTGTTCTTGGGTACAGGAGcactaaaagaaaacatgatttgttttCCAGAGAAAACATGAGTAGCAGCTAATGAGGCTCAATGCGTTTCATGACCTGCTTCCATGGCATCGCCTTACAAAGAATCTGGCCTTGcacctctcctcttctctgtaTTTTGCTTGTCTATGCAGTCTTAATGCTACAGCCTGGGATTAAAGTATCTGCCACAAAAGTGACTTTCAGGGCCCCTATGCCTCTTCTGTTTGAAGGCTGGAAAACAACCAAGCTTTCATCTTGAACCAGTAACAAAGCCTGAAGACGCATTCACCGAGAGAGATGAGAGGCAGGCATTGTAGCGACCCCTTTTTTATATCTGGCCTTTTAAGACATCCTCTCTGGAAATGACATCTCCTTCATAGTACTTTCCATCGCTTTAGGAGCCTTGGTCTGCGCAGGCAAAAATGGAAACCTAGACAAAAAAGATGAGGTCCAATTAAAGGGGCAAGTGTGGAGTGGCTCAAGAGATGCACCCTGAGGCTTGTCCGCCATAATGACAGGGGACGAAGAACAGGAACACGGTCAAGCTGAGTGGcaatttttttcactgtaaagGTAATAGGCATCAGGTAATGCTGTTATAACGAGACACTTTTGATTAATCCAATGCTTGTCTGATGTCCATGGTAGGTTTTTAAGctcttttccttattttttgATATTCTTGTCGGTGCAGATGTATGTCCTCTAGTTCTCACCCAGGATAGCATGGTGTCCTTAGGTCTTAGAAATGGGCACATGCAGCAGCAGCGGCAATGTGTCTGAGGTTTCCACCCACAGgcaagacagagacagagcacAGAGAAAAAGGCAAGATGTGAAGCTCTGAGAAAGATGGCGAggggaactaaaaaaaaatagaaaaaaagtgaaatacgGTAGGTCTGAATTAATGATGGCACTGAAGCAGTGGTAGGCCCAGTGGAGGCTTGAACCAGATTTCAACCTGAGTGGATTTTATCCCCTGGAGGTGAGTCGAGCACAGAACGTCAGCGCCATCACATGCCGGCTCTGAGCACGGGCCACGGGGACCTCCATCATCCCTTACCACTGCTTTTCCCCTCCCAAATTATATAGGACAGCTATCCATGTAGCGTGTGTATGTACATTATTTATCTATGCCTAAAAAGCAGCATGACAGTTCCTAATAAATTAGAGCGATAGACTGCTGTGAATAAATGGCCTGGTGAAAATAAGGAGAAAATTAACGGGGACAAGAGAGTTGGAGCGGGAAAAAGTTTGAGCTGGATGAAATGATGATCTGTGGCCTATTACAAAGGCAAATTATCCATTTTGAAAAAAGGCAggaagtgtgttattattgcTACCATTACTTATAATAAAGGAAGGAAGGTGCAAAAAAATCTGGCTGTTAATGCCACTGCTTCCTGAATGCCAAATCCCTCCTCCACACTATAAACATCCATCGCTCTGAGAAAGGCTCCGCTAATGTGTCTGCGGCTGAAGAAAGCCTATGCACATATGTCAATAAAATGCCTAGACATGTGGAAGAGGCTGGAGGAGAGCAAGACGGGGGAGAGATCTCTGCTGAGAATGGGCTGTCACCCACGATCAACATGATGACCTCCTCAAAACTTCAACCCTTGCAAGTCAGAATAGGTCAAGAGATTACACGTGAGGCTTAGAAGATTCTCCTCTGCCTCTTGTAAACTGTGTCTACTGACAGGTGTGAAGATAGTTATGTCTAATTAAGTGGAAGTGGAGCTGTGGGCCATATGGAATGAAGATATAATGGCCAGACTTGTCAAAACAAAAAGGGGTCAAAGTGCTAAGCTGCGAATTCAGGACAGGAAGAATCAGTCACAGACGTGGAATAGCTACTGGGATGCTCATACGCATCAAGTTTCTAATAACCGTCTACTTGTTACTCTGCAGCTGCATGACCTGCAAGTGAAGGTGTTTTCATTAAGAAGCTCAGGAGAACACGTGTACTGGCTCAGTAGTTTTCAATCCTAGTTCCTGGTAGCTCATTCACTTGGAAAGGTTTTCTGTTTATCCTGCTCTGACCTATCTAACACAGCTCATTAGGTAATCATCAAGGCCTTGATCAGGAGTCAGGGGTCACCAGGGCTGGAAGTGAGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112547 lncRNA downstream 278571 6385400 ~ 6386284 (-) True G94761
TU112499 lncRNA downstream 383596 6272238 ~ 6281259 (-) False clmpb
TU112524 lncRNA downstream 397065 6263752 ~ 6267790 (-) True G94746
TU112523 lncRNA downstream 404710 6259340 ~ 6260145 (-) True G94745
TU112522 lncRNA downstream 405823 6258115 ~ 6259032 (-) True G94744
TU112884 lncRNA upstream 332041 7001648 ~ 7002634 (-) True G95072
TU112878 lncRNA upstream 416904 7086511 ~ 7088041 (-) True G95066
TU113068 lncRNA upstream 657881 7327488 ~ 7327703 (-) True G95227
TU113311 lncRNA upstream 666758 7336365 ~ 7336566 (-) True G95440
TU113322 lncRNA upstream 718125 7387732 ~ 7430763 (-) True G95449
XM_026927437.2 mRNA downstream 383325 6197243 ~ 6281530 (-) True clmpb
XM_034305461.1 mRNA downstream 547226 6048476 ~ 6117629 (-) False gramd1bb
XM_034305150.1 mRNA upstream 323529 6993136 ~ 7035230 (-) False ets1
XM_026927119.2 mRNA upstream 323529 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA upstream 323529 6993136 ~ 7017324 (-) True ets1
XM_026927116.2 mRNA upstream 326808 6996415 ~ 7035229 (-) False ets1
XM_026927118.2 mRNA upstream 326808 6996415 ~ 7035192 (-) False ets1
trnam-cau_19 other downstream 470708 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2172116 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2491261 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 3133164 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3896557 2759612 ~ 2768298 (-) True G93047
trnap-agg other upstream 195661 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 478337 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 772766 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1798694 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 3598870 10268477 ~ 10294823 (-) False ttc38

Expression Profile