RNA id: TU112878


Basic Information

Item Value
RNA id TU112878
length 1531
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G95066
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7086511 ~ 7088041 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcacatTTATCTACATAGCCCTTTTATAAAAGGTAATAATACATTGCAGGAacaacaaaagtaaaaaaaaaaagaataattgcaaaattatatatatttttatataaattcatatatttaatattcaaaatacATTGCATATATGAAATAGCACAATTCCTTCATTAGATAGTGATATTTTGAAAAGAGGATGGGttgggtatttatttattcatttatttaaactgtGTATTGCTCTACTTCTACAGTTAGGAAAATTCAAGCATGGGAATATCAAACCTGTCTAATTTTAGACCCTGCAATCATTTGTGAGGCACGTTTGAACTTTGGGATTTGAAGCTTTAGCAGGAAAAGTATTGTTATTTTGGCACTTACAGTATTACAATTCTGGTctataaaacaaatgattttctACAAGGCATTTGTGGTATcgttaaagaagaagaaaaacaaaacaaatcaaatactTTCGCCTCATTACGACAAGGCACAGAGcacattacaaaaacaaaaacattcataaatTTATTGCCCAAATGTACAGATACAAAACACTAATGCTGTACATACTACCTTCAACACCGGCTTAAAAAAGTTTGCATTTGACCGAGGTCAACTCGTATTCATTTTCTTGATCTTTTAATACTGTCACATATGAAAATAACTCTGCATAATTTATACAGTAAGATGCTTTTAATGCCTAGTTGACcgttgattaaaaaataatagcaAATAGGTCTGACAAACGCACAGCGTTCGCGAATCTGAGGATCACACTGGTTTCAaccttttgtgttgttttaaatgttaacttgtttaattcattcaatttttttaaagaggtaCTTTGCATAATGTCCACattcaactgttcagtgatttAAGTAGCTTCAGGTAATGacttaataaaacaaagttaCTGTGTTCAGGAACATCATTTAACATGTAATGATGATTAAGTAACATTTGTGAGATGAGCTATAGTTGATTGAATTTTTACTGGCAGATAAGATAGAAATACAAATGTTTCCTTATAAACACAGTGAGGTACAGCGGCGAAAGTAAAACCACTTTGGGCTGCTTTCGAAATTAACACTAAGTGGATTAAAATATATCGTCTGCTTCACAGGCAGTTTTCACATCAGCACTGACTCCGTGGTTTGGCTTTAAATACTGCATGTTCGTCTTTTACAATGTTTGATTGGTTTTCACATGACCAACCACGAGCCTTTGGCAGGTGATCATCTTTCGCCTATGGAGTGCTACATTACACTGAAATTCATAGGAATCAATGTCAGCCTTTTATTGACTTTCCTACTTTATAGGAATGTTACTTTTGAGATTGTGGTGATTGACACTTTGGCTAGCCAATAGAATATTACTGGCAAGAGAGAGCTGCTGGGAATTTTATCTTTGGGATTGTGGTGACTGACACGGACAAAACTCTGTGCAAACCTACAATTGTTTTCCTCAGCAATGGCCAATGTGTCAGAATTCCAGTTAGgaggaagagtgagagagaaatggcTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112884 lncRNA downstream 83877 7001648 ~ 7002634 (-) True G95072
TU112768 lncRNA downstream 416904 6664855 ~ 6669607 (-) True G94975
TU112547 lncRNA downstream 700227 6385400 ~ 6386284 (-) True G94761
TU112499 lncRNA downstream 805252 6272238 ~ 6281259 (-) False clmpb
TU112524 lncRNA downstream 818721 6263752 ~ 6267790 (-) True G94746
TU113068 lncRNA upstream 239447 7327488 ~ 7327703 (-) True G95227
TU113311 lncRNA upstream 248324 7336365 ~ 7336566 (-) True G95440
TU113322 lncRNA upstream 299691 7387732 ~ 7430763 (-) True G95449
TU113344 lncRNA upstream 332587 7420628 ~ 7421851 (-) True G95460
TU113383 lncRNA upstream 390831 7478872 ~ 7479107 (-) True G95482
XM_034305150.1 mRNA downstream 51281 6993136 ~ 7035230 (-) False ets1
XM_026927116.2 mRNA downstream 51282 6996415 ~ 7035229 (-) False ets1
XM_026927118.2 mRNA downstream 51319 6996415 ~ 7035192 (-) False ets1
XM_026927119.2 mRNA downstream 53769 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA downstream 69187 6993136 ~ 7017324 (-) True ets1
XM_026927547.2 mRNA upstream 1932 7089973 ~ 7092426 (-) True LOC113534626
XM_026927662.2 mRNA upstream 22718 7110759 ~ 7113794 (-) True LOC113534708
XM_026927532.2 mRNA upstream 34542 7122583 ~ 7126393 (-) True LOC113534612
XM_026927302.2 mRNA upstream 43556 7131597 ~ 7140900 (-) True LOC113534467
XM_026927273.2 mRNA upstream 58459 7146500 ~ 7157482 (-) True LOC113534453
trnap-agg other downstream 221172 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 892364 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2593772 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2912917 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 3554820 3429028 ~ 3531691 (-) False kcnab1a
XR_003403498.2 other upstream 59903 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 354332 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1380260 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 3180436 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 3180436 10268477 ~ 10294823 (-) False ttc38

Expression Profile