RNA id: TU113322


Basic Information

Item Value
RNA id TU113322
length 634
lncRNA type read_through
GC content 0.41
exon number 2
gene id G95449
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7387732 ~ 7430763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGGACTTGCCCACTGCACTGTCCCCGAGGCAGATAATCTTCACCTGTTCATCTGCGTCATATTTCTCCTGCTCCAGCTCAGGAATCCGCTTCATATCACCCGCCATACTCCAGTGCAGGCTTAGACTACTAACTAACAAGCACAGCAGTGTTTACACTCGGATATCTAACTCCGCTAATATAGCAACTAGTTATTACCTGGATTAAACTTTAATCCTCTGAGCTCTACAGCTAGTTCACTAacgacaagagagagagagaatggattTAAACTCAATAACCCAGAGTCAGTaaatgaatctctctctctctctctctctctctctctctctcactcactctatcAGGAACTATACAAATAACTTTTTGTTATTTGCATAAATCTCTGGTCATTGAGCTCACCAGCGTTAGCATTAGCTAACAGTAATTACGGTATTTATATATAGCAGGACcggctagcaagctaacatgcTCCTATGTAAGTGTTACATCACAGTAAAACATATTCAACAGCTCTAATTACAGcccaagaaataaaaaaaggtaatCATAAAATCTTTTGTAAAGTAACTGTATCACTAAAACAGTCGcacatctctctctctctctctctctctctctctctctctctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113311 lncRNA downstream 51166 7336365 ~ 7336566 (-) True G95440
TU113068 lncRNA downstream 60029 7327488 ~ 7327703 (-) True G95227
TU112878 lncRNA downstream 299691 7086511 ~ 7088041 (-) True G95066
TU112884 lncRNA downstream 385098 7001648 ~ 7002634 (-) True G95072
TU112768 lncRNA downstream 718125 6664855 ~ 6669607 (-) True G94975
TU113383 lncRNA upstream 48109 7478872 ~ 7479107 (-) True G95482
TU113668 lncRNA upstream 285826 7716589 ~ 7794006 (-) True G95752
TU113669 lncRNA upstream 285826 7716589 ~ 7794006 (-) False G95752
TU113700 lncRNA upstream 389627 7820390 ~ 7859029 (-) True G95773
TU113718 lncRNA upstream 430759 7861522 ~ 7861806 (-) True G95783
XM_026927482.2 mRNA downstream 76352 7296120 ~ 7311380 (-) True trpc6b
XM_034305078.1 mRNA downstream 76699 7296120 ~ 7311033 (-) False trpc6b
XM_026927036.2 mRNA downstream 93821 7284651 ~ 7293911 (-) True cfap45
XM_026926938.2 mRNA downstream 104423 7274676 ~ 7283309 (-) False tbrg1
XM_026926937.2 mRNA downstream 104423 7274676 ~ 7283309 (-) True tbrg1
XM_034305464.1 mRNA upstream 7328 7438091 ~ 7694427 (-) False shank3a
XM_034305465.1 mRNA upstream 7328 7438091 ~ 7694012 (-) False shank3a
XM_034305463.1 mRNA upstream 7328 7438091 ~ 7614096 (-) False shank3a
XM_026927729.2 mRNA upstream 7328 7438091 ~ 7614096 (-) True shank3a
XM_026927730.2 mRNA upstream 7328 7438091 ~ 7614095 (-) False shank3a
XR_003403498.2 other downstream 230244 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 522393 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1193585 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2894993 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 3214138 4173288 ~ 4173594 (-) True G93711
XR_003403522.2 other upstream 11610 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1037538 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2837714 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2837714 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 4157238 11588001 ~ 11610964 (-) False arntl2

Expression Profile