RNA id: TU113344


Basic Information

Item Value
RNA id TU113344
length 1155
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G95460
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7420628 ~ 7421851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attcaTGTGATTATCCAACTAGCAAATGATGTGGCAGTGAATCATGCAGTGAATCATGTACCTTTCATGtaaaacagcaccacacacacacacacacacacacacacactcatatactcattcacacctaggggcaatttattaTGAGAAGACAATGCTACCCGTCAGCACAGTGGGTAGtattgttgcctcacagctccgcTGTCATGGGTTTGAgactgagctcaggttattacCTGGATGGAGTTTAGTATGGTCTCTCCATGTTTGCATCAGTTCTTCTGTatgagtgtgttggtggtgccctgtgatggactggcagcTCCCTCAGGGTAAACTCTCCTGCCTTGCACAGAGTGAAGGAAATATATAgatgccttgcataagtattcacccccattcCTGTGAAACTCCTAAATTAGTTCTTTTGTAAAGTGACATAATTACACCATCAAATTTTTAGTTTGCTAATAAAGAATTACATATCATTAGCACCTTTTGTCTGTACCTGAGCTTATGGTCCTAGttctttttgtaaaatgttcaaTTTAATTACAGTCCACAAAACCATTTTAACTTggattaaaatggattcatttaaaatggattaatttaaaatggataaaattaatTTGGATTCTAAATTTTTTTGGTGGGCCAGATTATAACCTTTATTGGGCCAGTCCCAGTCCAAGGTCCATTGATCCATGATTCACACCCCTGATTTAAAGTGACCAAGCAGGAGAGTATTGAGTGTTTCCAGAGGTTGGGATATTCTTGTTGCTCTGAATTAATtgcaagtaaaaataaagacCATTACTGTGGTGTGGGAACTATGTCTAAGCCAGAAAGCTACTCTGCTGCTTTCAGTTTGATGAGCAATCCATTCAGTAatttaatcagacaaaaaattTTCAAGCTGAAGACAAATCATTCAATTACGTTTCAGTTAATTGTCTTATTACTGTAATCTTTACATTATTTTGCCTTGTGTGGAGCAGTCATTGATTGTGACATGACTTGTAAATTGCTTACTTTTCTTGGCTATTTATTCTTGAATAAAGTGCTAAATCCAATATCTGGTCATTGTCCCTGTGTTTTGTAGTTGatacatcatctgtcaaacagaCGTAGAGGCTGTGTTATGGCATGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113311 lncRNA downstream 84062 7336365 ~ 7336566 (-) True G95440
TU113068 lncRNA downstream 92925 7327488 ~ 7327703 (-) True G95227
TU112878 lncRNA downstream 332587 7086511 ~ 7088041 (-) True G95066
TU112884 lncRNA downstream 417994 7001648 ~ 7002634 (-) True G95072
TU112768 lncRNA downstream 751021 6664855 ~ 6669607 (-) True G94975
TU113383 lncRNA upstream 57021 7478872 ~ 7479107 (-) True G95482
TU113668 lncRNA upstream 294738 7716589 ~ 7794006 (-) True G95752
TU113669 lncRNA upstream 294738 7716589 ~ 7794006 (-) False G95752
TU113700 lncRNA upstream 398539 7820390 ~ 7859029 (-) True G95773
TU113718 lncRNA upstream 439671 7861522 ~ 7861806 (-) True G95783
XM_034305523.1 mRNA downstream 1754 7415467 ~ 7418874 (-) False LOC117597612
XM_034305522.1 mRNA downstream 1754 7415467 ~ 7418874 (-) True LOC117597612
XM_026927469.2 mRNA downstream 17511 7399292 ~ 7403117 (-) True tsen34
XM_026927001.2 mRNA downstream 22986 7391865 ~ 7397642 (-) True bcl7bb
XM_026927125.2 mRNA downstream 30580 7376141 ~ 7390048 (-) False baz1b
XM_026926949.2 mRNA upstream 121 7421972 ~ 7425581 (-) True LOC113534276
XM_034305464.1 mRNA upstream 16240 7438091 ~ 7694427 (-) False shank3a
XM_034305465.1 mRNA upstream 16240 7438091 ~ 7694012 (-) False shank3a
XM_034305463.1 mRNA upstream 16240 7438091 ~ 7614096 (-) False shank3a
XM_026927729.2 mRNA upstream 16240 7438091 ~ 7614096 (-) True shank3a
XR_003403498.2 other downstream 263140 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 555289 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1226481 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2927889 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 3247034 4173288 ~ 4173594 (-) True G93711
XR_003403522.2 other upstream 20522 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1046450 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2846626 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2846626 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 4166150 11588001 ~ 11610964 (-) False arntl2

Expression Profile