RNA id: TU114448


Basic Information

Item Value
RNA id TU114448
length 2213
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G96421
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9084327 ~ 9086671 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTCTGTATGTGGAGCCATCCTCTTTGGGTGGGTTGTAATTTAGCTTGGTCCTAtaaatttgtaaacatggtGGGAAAAATTGAGCAATTGGTAGCATATGCATGATTacaattttgacacatttccaAGGAAAGAACGGAAAAGTGTtgtttactccaaactcacttataatCGATGTCTAAAGGCAGTTAAAACACACTTATCCAAAGCATTTTTGTATAATACTTTCCTGAATTCTTTGATCAAAGGTTTAAACCTCTATAAATGACCACCGTGCAGATGGCACTACTTTTTCAGATGAATaacattcacagggacttgtatacgAGACActtatttctatattaaaaaaaaaaaaacagaaagaaaaacatggaaTTGTTGATGTAGTGACGTTGTCTCTGacgagacatttatttagcatttacggaagtttccagtgtcagtgctttgtaacactcaacACTAAaactgtaactaagttttctgacatgggaaaaaaattaggacagagttgtttgttctgtttctcaataacatgataaacagcatttttaaaatttgacatCAAGacgtggaaaaaaaagagagatgttggtgagggaacgttagtgataacaggaactaacatgccTCGCTGACGTTACATAAGATTAAACATAACGGATAAATCATATgaaatgttattctttaataaataaaggataGTTAGcacatttctgtggtataagaggaataaaacgtgcCATTTTTGAAAAACGGTAGTGGCATCTCActaccctgttgttgattattttgctataactgCACATTCTGTCACGTTTTATACTCTACAGTGTGTGcaattacaggaaaataacacTTGCCCTAACATTTCCGTTATAAGCGAGTTTTACATAAACAGCTTTTCTGTCCCACAGGGATGCAGCTGATAGGCTACGTAAGCAGTGCATAGaaattaggttgaaaaacagGTTGTTCTTGAAGCTTAGGAGTACGTAATATGCAGGATGGGAACGTGAATAGTCGCGACAAGATATAAAGATATGAAACGTGACTAACAAACCCTGCTCCTGGAGCTCCAGTAGCCTAATAGGGTTTCTCTCCACCCTGAACTGacacacctgatccagctcaCAGCCAGTaaacagtgtgttgtgttataaTGTAACCTCAACAGGGTTAGGCAacctattttgtttttattatctcAGCTCTTATGCATCATGCCAAACCACAACAAATAGTTTTTATGTTGGTTACTGCACAAGTGCATAATCAGCTTGCATGAAACCCTTTCTTCTTCAGTGTTTATCACTGAGACTTTGTTTCTATCAAAAGCTACACCACGTGCAAGAAATCCTTCCATATGAGCCTGAAGGAAAGGTAGGGAAGTGGAGTGTTATGACACACCCTGTTGCTGCTCCAGCATGTCTTCACAAGCATGACTAAGGCCTCATGCTACAGTGTTATGCAAACCTGAGCACCACTTAGAGTGTAACACCATGTCAACACCACCATGTAGCACACTGTTATGGGAGATGTAGCCTAGATGTAGACAAGATGTAGGCAAGATGTAGTCTACATGTAGGCAAGATGTAGTCTACATGTAGGCAAGATGTAGTCTACATGTAGGCAAGGTGTAGGCAAGATGGAGTCAAGGTGTAGCCAAGATGGAGTCAAGATGGAGGCAAGATGTAGCATAGATGTAGACAAGTTGTAGTCTAGATGTAGTCTAGATGTAAGCGAGATGTAGGCGAGATGTAAGCGAGATGTAGTCAAGCTTGTGACATTTTCCTGGAAATGTCTTTCTAGTACCTGATATATGGACTTGCGGCTGCCAGGATATTTTTCTGCACAGGGATTTCTTCTCCGTCCAGGACCAAAACAGCGTCCTGAAAGCTGGCATCTTCTCTGAAGGATCGCAGGGATCTTAAAAGCTTCTGGGAATGCTGTGGATCCGAGACAACTGACCCCGGATCAGCCTCAGCTCCAGCCTCTGCCCCGGCTTTCGACATTTTCTCCAAACTAACTAACTAGAAAGAAAATTACCTATAAAACATTAACGAGGACCCATAACATGAGTAAACAATCTGGATTAAAGTGCAATTCGCGTATATTAGCTAGTGTTATAAATAGAACGAGTCGTATAATTAGTTTTTATAATCTAATTCCCCACCTATGACTTCATGCTCCGGGGAGGATTCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114213 lncRNA downstream 321731 8754558 ~ 8762596 (-) True G96220
TU114155 lncRNA downstream 454204 8629900 ~ 8630123 (-) True G96170
TU114151 lncRNA downstream 471313 8612815 ~ 8613014 (-) True G96166
TU114124 lncRNA downstream 629607 8395812 ~ 8454720 (-) False LOC113534821
XR_004578351.1 lncRNA downstream 739669 8326831 ~ 8344658 (-) True LOC113534629
TU114462 lncRNA upstream 87993 9174664 ~ 9215815 (-) False cotl1
TU114463 lncRNA upstream 87993 9174664 ~ 9215815 (-) False cotl1
TU114521 lncRNA upstream 240010 9326681 ~ 9338784 (-) True G96484
TU114736 lncRNA upstream 330351 9417022 ~ 9417414 (-) True G96679
TU114733 lncRNA upstream 330915 9417586 ~ 9503941 (-) False G96677
XM_026927775.2 mRNA downstream 1718 9080039 ~ 9082609 (-) True tmem243a
XM_034305452.1 mRNA downstream 1722 9080039 ~ 9082605 (-) False tmem243a
XM_026927453.2 mRNA downstream 8368 9049269 ~ 9075959 (-) True si:ch211-233h19.2
XM_026927334.2 mRNA downstream 159057 8886228 ~ 8925270 (-) False sema3d
XM_026927332.2 mRNA downstream 159057 8886228 ~ 8925270 (-) True sema3d
XM_026927401.2 mRNA upstream 47525 9134196 ~ 9161830 (-) True plcg2
XM_026926968.2 mRNA upstream 75851 9162522 ~ 9168274 (-) True meak7
XM_026927586.2 mRNA upstream 87984 9174655 ~ 9180225 (-) True cotl1
XM_026927430.2 mRNA upstream 99709 9186380 ~ 9191072 (-) True zgc:56622
XM_026926992.2 mRNA upstream 106680 9193351 ~ 9201817 (-) False tat
TU114125 other downstream 606091 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 1470231 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 1926839 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 2218988 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 2890180 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 1181806 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 1181806 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 2501330 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 3225411 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 3311016 12397687 ~ 12405281 (-) False znf143b

Expression Profile