RNA id: TU114521


Basic Information

Item Value
RNA id TU114521
length 1088
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G96484
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9326681 ~ 9338784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATTTTCTGTACTCATGAAACCCATTTTGCACCATAAAAAAATGGCACTGACAATTATGACATTATATGACATATGCTAATTCAAATGCATCAAATCACATGGCTTATATAAAGACTGTACCTTTTTGATTTTCCCTTAACATCTTGAGCGGAAACAAATCGTGGCCTCCGCCGAACAGCTCGTTTTGTTTTGTACCTTAGGTTTTGTTGATACATAtctgaaaattgaaaattttaTATGAGTGAACACTATGAAAAtacaatttgttttaaaaaacatattaatttttttatgtacagGTCTTGAAAGATAACTACCTTTTATGTTGAGGACATAATTATTCCCACCCAGGCTGAATGGAATTTCAGTTTCAATTTCAGAGAGGTACACATTCTCTAAAGCTTTTGAGGTGATTGATGCCAAACCTTTTTCATCTtcctacagaaaatatttttaacattatctGGTGTAACAATAATTACTAAGTTACTAAACAGCCCTGAtgtacattaaatgaaactctgggtatttattaaatgtgcaacaattatatatagttatataaatatattttgtagttatctaaattaatatttaaaatttatagtATTAAATAATCGTTAATGAACTTTACTAACCCCCTGGCCATATTTAATCCATTGCCCTTGATCGTTCTTCCAGTACCAAAGCCACTCAGTGGTCAGGATGAAGTGAGGAGGTTTGGTAACGGAGGACGCTGTGGATAGACGACGAACTGCTCTCCCTCCACACGTCATTAAAGTGAAGTCCACAGGAAGAGGCCCAAAGCTGCAGTCCAAAAACACAtACCAGAGCCACTCAGTGGTCAGGATGAAGTTAGGGGGTTTGGTAACAGACGATGCTGTGGACAGACGACGAACTTGTCTCCCTCCACATGTCATGGAGATGAAGTTGACAGTCTCAGGCCCTGGACTAAGAGTTTAATTTCACCATTTAGTGTTATATTTTTACACTTAAATTTGGCTTTTTGCACTTAAATGCATATGCAACTACTTCAGAATAAAAGATCAGTGTTTACCTCACTTCATTAGCTGGATTACAGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114462 lncRNA downstream 110866 9174664 ~ 9215815 (-) False cotl1
TU114463 lncRNA downstream 110866 9174664 ~ 9215815 (-) False cotl1
TU114448 lncRNA downstream 240010 9084327 ~ 9086671 (-) True G96421
TU114213 lncRNA downstream 564085 8754558 ~ 8762596 (-) True G96220
TU114155 lncRNA downstream 696558 8629900 ~ 8630123 (-) True G96170
TU114736 lncRNA upstream 78238 9417022 ~ 9417414 (-) True G96679
TU114733 lncRNA upstream 78802 9417586 ~ 9503941 (-) False G96677
TU114732 lncRNA upstream 159521 9498305 ~ 9503941 (-) True G96677
TU114861 lncRNA upstream 412098 9750882 ~ 9772020 (-) False LOC113534661
TU114926 lncRNA upstream 480603 9819387 ~ 9884455 (-) True G96840
XM_026927010.2 mRNA downstream 106477 9217244 ~ 9220204 (-) False LOC113534316
XM_026927009.2 mRNA downstream 106479 9217244 ~ 9220202 (-) True LOC113534316
XM_034304959.1 mRNA downstream 115751 9205345 ~ 9210930 (-) False LOC113534306
XM_034304958.1 mRNA downstream 115751 9205345 ~ 9210930 (-) False LOC113534306
XM_034304957.1 mRNA downstream 115751 9205345 ~ 9210930 (-) True LOC113534306
XM_026927329.2 mRNA upstream 11107 9349891 ~ 9414387 (-) False tbxas1
XM_034305376.1 mRNA upstream 11107 9349891 ~ 9414140 (-) False tbxas1
XM_026927328.2 mRNA upstream 11107 9349891 ~ 9410543 (-) True tbxas1
XM_026927082.2 mRNA upstream 286279 9625063 ~ 9692085 (-) False fgd4a
XM_026927086.2 mRNA upstream 286279 9625063 ~ 9685539 (-) True fgd4a
TU114125 other downstream 848445 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 1712585 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 2169193 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 2461342 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 3132534 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 929693 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 929693 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 2249217 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 2973298 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 3058903 12397687 ~ 12405281 (-) False znf143b

Expression Profile