RNA id: TU115237


Basic Information

Item Value
RNA id TU115237
length 4644
lncRNA type sense_over
GC content 0.39
exon number 2
gene id ttc38
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10266978 ~ 10294823 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGACACACtctcctttatttaaaaaatactaggatttaaagaatgacatttagTGCACCACCTAACATAGATATTTATAGTGCTTTACATGTAGCAAAAACTCCACAGGACAAAATTGGGTTGGCATGAAATTAAAAGTGCCAAGACACCATGACATTAAACACCTCACTCAGGAGCTTAAACTTCAACTCTGATATGTAGCCTAGCTCTGGGTCAGgacattaatacaaaaatatagaTATGGCAGAAATGAGTTGTTCAAATCCCTTATTTCTAACCAAATTAGTCATTTACTGGCAGTGCTTAAAGAAAGAGTGGAACATGTGGATGTTATAGAACAATTATTTAGAACTATTGATATAATGCTTCTTCGCACATATGAACACAAACAGCAACATGGACAAAACAGTTACCTAATGCTCTCAAAATGACAAGTAAAAAAGctaatagaaataaaacaacagaaatggaTATAAAATTAGTTTCAATGGCATTTGAGAAAATGATTTACCAAAATGTACAATCAGAAAAGCCAAACTTTTTTTGTGTAGTATGTCTCTGTGTTAGGCCAGTAATAAGCAGAATGAGATCAGATGATGAACTAACTACATATTGAGCTTAGCACAGTGTGAAGAACAGCTCAGTAAAGAGACAGCTTTTAGAAAAGATTACAGTGGTTATattggcttcaaatcatattgTACACTCATAAATGCCAAACTATAAAATAGTCACTTAACACTTTTCGAATGTGCAGCATGTATTAGTCCATCATAAATATGCCCCAACGTGAAAAGCCAATAGAAATTAATTCTACAGACCTGACATTAAGGCAATTGAATGGGCaccttttcaaaataaaaaattatgccAATTTTCTTCACATAGTGCTGAACTCAGATTTAAAGAAAACTAATATAGgatagaataaaataatgaaaacagcaTATGGaataaaaactgacaaaaatgacaaccaatatacaaaaaaatgcacaaatgcaaAAATTAGATAACCCTTGCTTTAAAGTAACACATTTTGTTTCCCCTTGTGCAGTTAGATATTACAGAAAGCTTTTCTGATACTTTAAAGCAAACCAAAGATAAAGATAAGCAACATCATGTCATTAAACACATGCATCATATTCCATAGTTATAACTGAGATgatatgcaggaaaaaaaacactgagtgtggGATGGCAGTAAAggatatatttaattatttaaaattcaagATTTAGAAAATTCAAACTTCTACACAATGTTGATTTCACTTTTGCGTGATGTCATACTGCATTACAAGTGACTATAATAATCTGACTTCAGGACTGCAATCTAATTTGTGTTTATGATAACAACAGGTCCACTATTGTGGAggtaaaattacagtaaaagcTGATATATGTCCTAACTCCTTCACAAACCATCATCAGGGCACAACAATCCACCATATAAATACTGAGCATGTTAACAGTTCAGTTTTTATTATGaagcataaaaacacacaaattccAAGTAACTAATGTTTCTTATAAAACTGTGACTTGAGGCTAAAGGAACCTTGTGACACACAGCTCCGTGTTACCGTTTGCTTCTGTTAGTGCAGCTTTAAGTCTGCAGTGATTTCAGCTCCATGCCAATCCCAGTCAGCCCCGATATCCACCTGGTTTTAGCAAGCAGGTGTTATTGTGTTAGAGTCTACACTGTTTCTTAGCAATAGTTAATCTTTCTCCTCACGTCCTTATCCTCTTAAGAACCTCAAACAACATCTCACATAGCAGCAATGCATAGTGACAGCGGTTCTATATACATCCTAAGCAgaatacaaattttgtccattCTTCTGCATATCTAGGATGAAAATCTGAACTGCTGACCACCTCTGGTCCCTGATTGTATAAAACCAATTTTCCCAAACTACAGTAAACAGCAGTTCTGTGCTCAGTTGATGCCCGATTAAATgagtggtgtttttttgttgttgtttgtttgttttgtttttttttaatcagcacaACCTGCACGAAGTTTGAACACTTTAGGAGAAGGCCATGCTATCTGAGTCCTGGGCTGGATAAGAGATGGCTGATGACCCTTTTCTTGACAGAATGTCAGAAAACAATTGCAGTCTGGACAAAATAATTGATGCTCTACTGGACAGAAATTAAACCCTACAAAACCTTAAGCTAAAAGCACTGTCTTTGATCTTTTACTCTCCTCTAAGGAGAAGCAGGTAGAGATGACAGAACAGATTTAGTCACTAGAGCTGTATCTGAACTAAAGGTATGAATACAAAACCAGCTCATCTAACAGGAATGTCAGTTGAAATAGAAACTACTTTTACCTCTGTGGCACATCCTAGCcttgctagaaaaaaaaattaatagataATGAGAATGAGGGAAAACAATGGATGAAGAGCTCAGGtatacagaaacagaaagaatgcATGATCCTTGTCCTCTAATGATCAATAATGCAGGAAGGCTTCTTTCTTAGCATCAGTTAACATGCCTCTTTGCACGCTtttcatgtatgtgtgtggagtttACGATGCGAAAGATGAATCTTCAATCTTCACTTGTTATGTGCGGTTTTTGGCTAATTATTACAACTAGAAAAAACTGTACAGCACTGGCTCTAAAAcgtgaaaatattattaataaacagattgCAGTCTATGTGAGTTTACACAGGGCATTGTGACTGTATCAGGGTATTTCAACATGGGGAAAAAGGAGAAACATCCACAGTTGCCTGACATCCCGATGTGACACGCaatccacacttttttttccaacttaCTTGCATCCTTTTCTAATCAATCAGTATAAATCTGTGCTTATGAGTAGTTAGAACACACCAAGCCCCTCTCTgaccatccacagcaacccACAGTCCTACTCAGCTAACTCAGGGAACACTTTACTCCTCTGATGCAGAAAGATGAGAATTAAAGGACTGGGgtacaaaaagagaaaaaaaaccccacaaaaaaccccaaaacaaataATCGTCCATTGAAATGACAGCGGTTTCCACCTAGCAGAAAACTACAGAGGCCAGGATGGAACCTTTTGTCATTATCACTGTCGAGGGAATTTGAACAATgtgaataacatttaaaaagcacaCCACCCAAAGGATGGCACGGTTAATCTTCTATATCTTCTCCTTTCCGTGCAGGATGGAAATTATACATTAGTAGAGCAATGCAGTTTATTGTTGTCATGATATTCTCCTTCCTGCAATTGTTAGTTAGTCCAAGCATACAAAAAAAGGTTCGAAAGGAGTAGGGAAAGGGAAACAGCCAGTACAGGGCTTCTTAGCCAAAGAATTTGAACTCctccttcctctctgtctctctttctctttggcAGATGAGTGATGTCacgagagagaagagaaagaagaagaaaagggacGCATGGCTGATGTTTGTACAGGGAAGTCTGGGGAGAGCAGGAGATAACATTAGGAGATGTAGGTGATGTAAAGGAGCTTTTCTTCCACAATCAGTCCCATAAGCCTCTGTACTGGAGCCTGGCTAGGCATTGTACTTCTTCCCTGTTCTGTGGATCTGATGAAACAACGTCATGGAAAAGGCCATCCCCAGGAgctgcaaaacaaataacacatcCAGAAAGTGAGGAGTGAGATACAGGTAGCCAACACACATctcaaacacacgcacacacacacacatcaaaaaaGGACAGCACACAGCTCAAACATacagcccaaacacacacacgacgcTAACACAGTCAGCACATAGCTCAAACACgcacagctcaaacacacacagctcaaacacagTCAGCACatagctcaaacacacacagctcaaacacagTCAGCACatagctcaaacacacacagctcaaacacagtcagcacacagctcaaacacacacagctcaaacacacgGCTCAAACACGGTCAGCACACAGTTCTAACACAATCAACACAAAGCTCAAACACAGTCAGCACAcggctcaaacacacacagctcaaacacgcacagctcaaacacacagctcaaacacaTTCAGCACatagctcaaacacacacagctcaaacacagTCAGCACatagctcaaacacacacagctcaaacacacacagctcaaacacagTCAGCACatagctcaaacacacacagctcaaataCAGTCAGCACatagctcaaacacacacagctcaaacacagTCAGCACatagctcaaacacacacagctcaaacacagtcagcacacagctcaaacacacacagctcaaacacacgGCTCAAACACAGTCAGCACACAGTTCTAACACAATCAACACAAAGCTCAAACACAGTCAGCACAcggctcaaacacacacagctcaaacacacacagctcaaacacacacagctcaaacacacagctcaaacacagtcagcacacagctcaaacacacacagctcaaacacacgGCTCAAACACAGTCAGCACACAGTTCTAACACAATCAACACAAAGCTCAAACACAGTCAGCACAcggctcaaacacacacagctcaaacacacacagctcaaacacacagctcaaacacaTTCAGCACatagctcaaacacacacagctcaaacacagTCAGCACATagctcaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115159 lncRNA downstream 171620 10071553 ~ 10095358 (-) True G97054
TU114927 lncRNA downstream 348545 9892526 ~ 9918433 (-) True tmtc2b
TU114926 lncRNA downstream 382523 9819387 ~ 9884455 (-) True G96840
TU114861 lncRNA downstream 494958 9750882 ~ 9772020 (-) False LOC113534661
TU114733 lncRNA downstream 763037 9417586 ~ 9503941 (-) False G96677
TU115308 lncRNA upstream 97313 10369263 ~ 10370417 (-) True G97172
TU115309 lncRNA upstream 98798 10370748 ~ 10371325 (-) True G97173
TU115347 lncRNA upstream 207117 10479067 ~ 10479287 (-) True G97204
TU115367 lncRNA upstream 247147 10519097 ~ 10519305 (-) True G97224
TU115368 lncRNA upstream 248845 10520795 ~ 10520997 (-) True G97225
XM_026927423.2 mRNA downstream 248295 9997813 ~ 10018683 (-) True LOC113534539
XM_026927546.2 mRNA downstream 348497 9822233 ~ 9918481 (-) False tmtc2b
XM_026927611.2 mRNA downstream 494980 9750980 ~ 9771998 (-) False LOC113534661
XM_026927169.2 mRNA upstream 13527 10285477 ~ 10294820 (-) False ttc38
XM_034305228.1 mRNA upstream 23901 10295851 ~ 10398875 (-) False mical3a
XM_034305227.1 mRNA upstream 23901 10295851 ~ 10398875 (-) True mical3a
XM_034305258.1 mRNA upstream 23901 10295851 ~ 10373475 (-) False mical3a
XM_034305226.1 mRNA upstream 23901 10295851 ~ 10373475 (-) False mical3a
TU114125 other downstream 1788742 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 2652882 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 3109490 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 3401639 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 4072831 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578339.1 other upstream 1316051 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 2040132 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 2125737 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 2149152 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 2773873 13045823 ~ 13052311 (-) True G98770

Expression Profile