RNA id: TU115309


Basic Information

Item Value
RNA id TU115309
length 558
lncRNA type intronic
GC content 0.38
exon number 2
gene id G97173
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10370748 ~ 10371325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtCTGTAAAAAgttagtttgattttttttttttttttggttcaatATTTCAAGTAACTGTTTAACAAAAAGATCGAACGtctttaagaaaataaacactaagATGATACAATGGGCTACATGTAGGCTGCTTGTTGCTATGCAGATTTAAGTGACTGTGTGACATCATTATTTGTTTTACATGCTGTTTGATTGATGTGCTTTTGGTCAGGAATTCTACAGCTACTGATAATACCTTCAGCATTTGCagaaaattaagaaaagaaaagtatttCCTCATGATGTTGTTGGCATGTTTACCCACCCATACAGTGGGGAAGtagaaaaatctaaaaataaacaccCGTAGTAAAGAGAGCAGCTGatttgtgcttctttttttaacccattACTGCAGGAGTAAGGGTAGTACAGAAATAACAGCTAACCCACACTGTGTAGTCTGccagtgagagagggagagagagcactCAGAATTTGGGCACTGAACTGGCCATAAAAGGAAGCACGTTCAACCTGTGTCTGTTATTGTTTGGTTACCGCAGCCTCAGGAATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115308 lncRNA downstream 331 10369263 ~ 10370417 (-) True G97172
TU115237 lncRNA downstream 98798 10266978 ~ 10271950 (-) True ttc38
TU115159 lncRNA downstream 275390 10071553 ~ 10095358 (-) True G97054
TU114927 lncRNA downstream 452315 9892526 ~ 9918433 (-) True tmtc2b
TU114926 lncRNA downstream 486293 9819387 ~ 9884455 (-) True G96840
TU115347 lncRNA upstream 107742 10479067 ~ 10479287 (-) True G97204
TU115367 lncRNA upstream 147772 10519097 ~ 10519305 (-) True G97224
TU115368 lncRNA upstream 149470 10520795 ~ 10520997 (-) True G97225
TU115345 lncRNA upstream 155785 10527110 ~ 10529510 (-) False si:dkey-246g23.2
TU115392 lncRNA upstream 285867 10657192 ~ 10661052 (-) True G97246
XM_034305256.1 mRNA downstream 22018 10295851 ~ 10348730 (-) False mical3a
XM_034305233.1 mRNA downstream 22018 10295851 ~ 10348730 (-) False mical3a
XM_034305232.1 mRNA downstream 22018 10295851 ~ 10348730 (-) False mical3a
XM_034305255.1 mRNA downstream 22018 10295851 ~ 10348730 (-) False mical3a
XM_034305229.1 mRNA downstream 22018 10295851 ~ 10348730 (-) False mical3a
XM_026926926.2 mRNA upstream 54415 10425740 ~ 10439871 (-) False wfdc1
XM_026926925.2 mRNA upstream 54415 10425740 ~ 10439870 (-) True wfdc1
XM_034305362.1 mRNA upstream 77661 10448986 ~ 10453158 (-) True si:dkey-246g23.4
XM_026927066.2 mRNA upstream 105861 10477186 ~ 10505123 (-) True kcng4a
XM_026927354.2 mRNA upstream 156852 10528177 ~ 10581902 (-) True si:dkey-246g23.2
XR_004578315.1 other downstream 75925 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 75925 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 1892512 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 2756652 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 3213260 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 1216676 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 1940757 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 2026362 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 2049777 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 2674498 13045823 ~ 13052311 (-) True G98770

Expression Profile