RNA id: TU115769


Basic Information

Item Value
RNA id TU115769
length 406
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G97601
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11187495 ~ 11188023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTAGATATCAGCAGGAGTCGTGATTTTATGATGCTCGTGAACAGCATGGCCGTTGCATTTGCCATTCTTCTTTTTACGCTTGGCCTGCTCTTTCTGCTCTTTCCTCTCACTGAACTTGAGAGTAGTGTTCTTTCCTGTGTTTATTCGCACCTTTTTTGGGCTCTACTGTATGACTGAAGTAGATAGTTGGCAGAGCATCGCCTTCCTCCTCGCCGCCTTCTTCttgctcatcatcatcatcaagctGTGGTTGGATACCATTGACCTGGCTTGTGTGAGAGGCAGGAGCACAGTCCCTGTGTTGCTCATGGCCATTAACCTGGACCGTGGTGCCAGCATCtgcctccttctcttcctctgaCGAAGAGGAAGTCGTGTCCTCACCGTTGGTATCCGTGCTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115763 lncRNA downstream 13322 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 13322 11173321 ~ 11174173 (-) False pdf
TU115392 lncRNA downstream 526443 10657192 ~ 10661052 (-) True G97246
TU115345 lncRNA downstream 657985 10527110 ~ 10529510 (-) False si:dkey-246g23.2
TU115368 lncRNA downstream 666498 10520795 ~ 10520997 (-) True G97225
TU115775 lncRNA upstream 2618 11190641 ~ 11190840 (-) True G97607
TU116033 lncRNA upstream 208093 11396116 ~ 11477114 (-) True G97831
TU116158 lncRNA upstream 492706 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 502974 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 502974 11690997 ~ 11693079 (-) True G97931
XM_026927490.2 mRNA downstream 7887 11173350 ~ 11179608 (-) False pdf
XM_026927492.2 mRNA downstream 7917 11173350 ~ 11179578 (-) False pdf
XM_034305384.1 mRNA downstream 7917 11173350 ~ 11179578 (-) True pdf
XM_026927545.2 mRNA downstream 15468 11169802 ~ 11172027 (-) True si:dkey-238o13.4
XM_034305493.1 mRNA downstream 145223 10706871 ~ 11042272 (-) True cdh13
XM_026926969.2 mRNA upstream 17626 11205649 ~ 11217476 (-) True tshz3a
XM_026927343.2 mRNA upstream 37527 11225550 ~ 11252651 (-) True mtss1la
XM_026927347.2 mRNA upstream 38057 11226080 ~ 11252652 (-) False mtss1la
XM_026927346.2 mRNA upstream 38057 11226080 ~ 11252652 (-) False mtss1la
XM_026927344.2 mRNA upstream 38057 11226080 ~ 11252652 (-) False mtss1la
XR_004578315.1 other downstream 892672 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 892672 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2709259 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3573399 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4030007 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 399978 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 1124059 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 1209664 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1233079 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1857800 13045823 ~ 13052311 (-) True G98770

Expression Profile