RNA id: TU115775


Basic Information

Item Value
RNA id TU115775
length 200
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G97607
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11190641 ~ 11190840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAATTCAAGACATTTTAGTTTCAATCCAAAGCCAGCTTTGTATGAACCAGCTGTCTTGCCAAGACATTACTCTAGCTTCATAGTTCAGTCCAATTTATCTAGATAAATTACTTTACTGTCCATTTCTGTAAAATTGCCTTTGGCTTCACAATAACTACACTAAACACTGACCActtaaatacactcacacacattaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115769 lncRNA downstream 2618 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 16468 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 16468 11173321 ~ 11174173 (-) False pdf
TU115392 lncRNA downstream 529589 10657192 ~ 10661052 (-) True G97246
TU115345 lncRNA downstream 661131 10527110 ~ 10529510 (-) False si:dkey-246g23.2
TU116033 lncRNA upstream 205276 11396116 ~ 11477114 (-) True G97831
TU116158 lncRNA upstream 489889 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 500157 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 500157 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 561685 11752525 ~ 11753198 (-) False plekhg7
XM_026927490.2 mRNA downstream 11033 11173350 ~ 11179608 (-) False pdf
XM_026927492.2 mRNA downstream 11063 11173350 ~ 11179578 (-) False pdf
XM_034305384.1 mRNA downstream 11063 11173350 ~ 11179578 (-) True pdf
XM_026927545.2 mRNA downstream 18614 11169802 ~ 11172027 (-) True si:dkey-238o13.4
XM_034305493.1 mRNA downstream 148369 10706871 ~ 11042272 (-) True cdh13
XM_026926969.2 mRNA upstream 14809 11205649 ~ 11217476 (-) True tshz3a
XM_026927343.2 mRNA upstream 34710 11225550 ~ 11252651 (-) True mtss1la
XM_026927347.2 mRNA upstream 35240 11226080 ~ 11252652 (-) False mtss1la
XM_026927346.2 mRNA upstream 35240 11226080 ~ 11252652 (-) False mtss1la
XM_026927344.2 mRNA upstream 35240 11226080 ~ 11252652 (-) False mtss1la
XR_004578315.1 other downstream 895818 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 895818 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2712405 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3576545 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4033153 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 397161 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 1121242 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 1206847 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1230262 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1854983 13045823 ~ 13052311 (-) True G98770

Expression Profile