RNA id: XM_034305444.1


Basic Information

Item Value
RNA id XM_034305444.1
length 3283
RNA type mRNA
GC content 0.47
exon number 17
gene id plekhg7
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11752525 ~ 11769986 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGGACTCTCCTCATATAGTCAACAAGGCAGCTGGGTTTGTTACTGTCTATTGTGCTGTAACGGCCGGTTATTTGTTTCTTGTCGAGCCGCAAAGCCTTTAAACCACCAAAGACACGTTAAACTCTgctaaaaaaattgtttaaatgtttaaatacttttttcagTAGCCGAAAGGTACCTGTTTCAGACTTAATTATTTATCACTTTTGTTCGCTGAGAGGGAACAGCGCGGCGGTGTGACCATagcctctctctcacacacacatcgccTCATGGAGAGgactgaaacatgaaaaaaaacacgtTTTTTCTCTCCAACATGGCTCCAAAGTGAACCAACTCTTCTGCAGCACACTCTTCACTTTCAGCCCTTCAGTGATATCATGCCGCTTTGCACAAGATGACTGACTTAAATCATGAGCATTTAAAGGAAAACGGAAAGCATGTGGGAAAAACACTGGACTGGACCTACATCGAATGGCACGATGAGGACATGGCCAAAACTGTGGACACTCACACCCAAACATCTCAGGAGCCAGCCGTGGACAAAGAGACCCAAACGAGCAATCCGGTCCTGATGCGAATGGAGCTGTCCAGAACACCCTCCAGACTGAGATGTGGCTCGCTGGGCGAGGTGGATGCCATACCCACACCGCTCTTTCAGTTTGACAGGCAGGCACCTGCTCGCATCTCCACATCTCCCACtctgaggaggatgaggagcaCCAGGCTTCCTTGCCGTGATGCAGGGTGGATAGGCAGCACTCAGGAGGAGCCTGGCACTCCCCCACCAAGGAGTCCTCTGTCACCTGCACACCATCAGAAATCTCCCCTCGCTACAGTTGTGAACCAGTCTAATGGGAACGGTCACTCTAATGACTTGGGGACTCCTGGAAAGGTCAGATCTCACAGATCAAAGACAATTAGCAGCAGTGGCCTTCACTTGACGCAGGAGTGTCTGAGTGTAAATGAAAGCGCTGATACTGATGATGATACTGGAGAGGTGAAAGAGCCAAGTCATAAAAGGCTGCAGGAAAGAAGGCGGAGCTCTGTGGTGGTCACTCTTCCTGGATTGGACGTTTCTCCCGGTGATCTTTTTGTTTCCAATGGTGCTGTCGATATTTTAAACCGCTCCACGTTTTCAGATACGAAGAAATCAAAGTGGCCTTTTTCAAAACGTACTATGAATAAAGGCAGGACACGCATAACTGCAGACATTGAAAAATGTCTCTCAGCCATTCAGATCCAGGAGTGGagaaacacacattttcagCAGTACAAGGATTTGACTTTGGAGGAGTTTCTGAGAAGTCAGCCTGAGCTGAGGGCAGAAGAAGAGCCAAAAGCACACAAAAGACAGGAGGCCCTCTGGGAGCTCTTCACCAGCGAGTGTGTGTACTTCCTAGACCAGTTAATGGTGCTGAAAGAGGTATTTCTGAATACTCTGTCAGACTTGCAGATGAGGGATTGTCTACAAGACATTGACTCCTGGGCACTCTTTGCCAACCTCAATGAGCTGTGCCTgGTTAGCTTTGGCTTCCTAACCAGTCTGCTGCGTGTGATTAAAGAGCTGTGGGCCACTTCAGAGCCTCCAGAAACCAATAGCACAGAGGCCCTGCTGGCCATTCTCAAAAAGGCTTTTGGTGAGAGCATTTGTCACTGTCTGCAGAAATACTGTCTGAACTACAGCAAAGCTGTCCTCTATTTAGACACCCTGAAGGCCAGGGAGGACGTCAGCATCTACGTGAAGTGGTGTGAGAGGAAGGAACAGTGTCGTAGGCTGCAGTTGAAGGATCTTCTGGTGACTCCTTTGCAGAGGTTCACACGTTACCCTCTCATCCTGAAGAACATGGAGAAGAGGAGTTGCACAGAGGCAGAGGAGAGCGCCTTACAGAGCGTAGTGGAGCTGGTGGACAGAGCCATACaTGATCTGGAGGGCAAGGTGAAGTGGTTGGATAACTATCAGAAAGTcaagcagctgaaagaagccTTGGTCTGGCTCCCAGTGTGGGAAAGAGACAAGAGAGCAAATGTTCCAGAGAATCTGAAACACTTGCTGAAAGCTGTCACTTTGGAAAACCTGGTCTCTCACCGTAGTCTCCGATACGAGGGAAAGCTTGCACTCACAGAGAATTCAAAGCTGAATGATGTTTACGTGTTTCTGTTTGATGAATTCCTCCTGATCACCAAGGTCAAACGAAATAAAAAGAAGTCTGTAGCTGGGGAGATGCACCCTGTGCGCTCTGCGGCTGGCCAGGAGCTGGAGCAGTTATTGCAGGAGGGCTGCAGCTTCACCGTGCTGGATCAACCCATCTCACTGGACCGCCTGCAGCTCAGGAACATAGACCAGCTTAACGCTACAGCCTCTGGCTTTCCCTGTTCTTTCATTATAATGCACCAGAATCGTTATCAGCAGTGCATCGGTGTCTTCATTCTTCAGGCCCCGAGTGAGTCCGTTAAGAAAGCATGGCTGGCTGAGATTGAGGAGGCGGTCGGTGATGTGCTGAAGCGGGACTCTCAGCACCCTCGGCTGAAGAGCTCTTCTCTCTATGTGGAGTCTTCTCAGATCTaactctcatcacacactcagaaTCTGACCATCAGAGGAGGTGGCCCACGTCAGTACTGCTGCCTAATAACATCACATGACTGGGACTAATAATATGGGTTCTACTTGACTGGCCAAGATCCCAGCATGGCTGTAGAGTCTCACATCTGACCTTCAAATCCGTGTTAATCCACTTGAAGAGGTTTATTCAGGTCAGACAGCAGTGTCGGGGCAAAGTCACCTGTGTCACAAATGACACAATTACATAGCTGTAATGCAAACTGAACTGTTGCTGTAACCTGACACCCACTGAAGACTAAATGTGCCACAGGAGTGGAATATTACACCTCTGAAATTCAGCCAAAATGGACGTTCCTGCTTTTATTAGTACCAtttgtggttttctttttttttttttttttaattaaagtttccATTGAAACTGAACTGTGGCCTGCTGTTTTACATTGGGACTGTAAAAGGTTGCATTTATAGCAGCGGCCTGTAGTGTGCTACATGATAGCAAGAGAATTTCAGGAATATCATATAATATGatatacaaaaatatcatataatatgtAAAGGACATTTTTTATGATAAAAAGGAACCAGTATAATGTGCTTCATTTCCTTTGATAATTTATGTCAAAGGGTCTCGTTTATCTTAGTAAAGTTGTTTGTAACTGTTTTCATAGACCAAACTCAAGTAAAAATTCCCACctgatttacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116158 lncRNA downstream 56437 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA downstream 60023 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA downstream 60023 11690997 ~ 11693079 (-) True G97931
TU116033 lncRNA downstream 275988 11396116 ~ 11477114 (-) True G97831
TU115775 lncRNA downstream 562262 11190641 ~ 11190840 (-) True G97607
TU116261 lncRNA upstream 100995 11870979 ~ 11871109 (-) False sspn
TU116615 lncRNA upstream 504291 12274275 ~ 12275411 (-) True G98342
TU116616 lncRNA upstream 505738 12275722 ~ 12276229 (-) True G98343
TU116665 lncRNA upstream 707919 12477903 ~ 12478277 (-) True G98383
TU116849 lncRNA upstream 942110 12712094 ~ 12713957 (-) True G98551
XM_026927475.2 mRNA downstream 77249 11672381 ~ 11675853 (-) True si:ch211-219a15.3
XM_026927539.2 mRNA downstream 142139 11586057 ~ 11610963 (-) True arntl2
XM_026927540.2 mRNA downstream 171218 11578245 ~ 11581884 (-) True si:ch211-245j22.3
XM_034305373.1 mRNA downstream 176114 11543660 ~ 11576988 (-) True ppfibp1b
XM_026927037.2 mRNA downstream 210721 11537242 ~ 11542381 (-) True endouc
XM_026927130.2 mRNA upstream 100924 11870908 ~ 11878204 (-) True sspn
XM_026927308.2 mRNA upstream 135624 11905608 ~ 11926257 (-) False slc6a15
XM_026927306.2 mRNA upstream 135624 11905608 ~ 11926257 (-) True slc6a15
XM_026927309.2 mRNA upstream 135624 11905608 ~ 11924563 (-) False slc6a15
XM_034305156.1 mRNA upstream 135624 11905608 ~ 11924315 (-) False slc6a15
XR_004578339.1 other downstream 142138 11588001 ~ 11610964 (-) False arntl2
XR_004578315.1 other downstream 1458279 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1458279 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 3274866 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 4139006 7442373 ~ 7614096 (-) False shank3a
TU116624 other upstream 542098 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 627703 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 651118 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1275839 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 1666917 13436901 ~ 13436975 (-) True LOC113534846

Expression Profile