RNA id: TU120105


Basic Information

Item Value
RNA id TU120105
length 517
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G101420
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18598851 ~ 18599367 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcaaggagacacaaccctgatcagaggccagcagtaagtcatttacaacttttaccagtgctgtctctgtgctatgatgaggcctaaatcctgactgatacatttcatgaatgttattcctatgtaagtatgagcgtagctgctgtgctacaaccttttctaggaccttggaaataaaggggaggtttgatattggtctatagttagacagctgacaggggtcaaggtcaggttttttaatcaggggcttgataactgctaatttaaaagatttaggtacatagccaatgctaagggaagaattgattatctttaaaagaggtttgattgtttcaggaattatctgtttgaggaaacaagtaggtaaaggatctagcatacagattgatgattttgatgatgaaattagtgaaattagttcagtctcttcaaggggagtaaagcgttgtagttgtttatctaatattatcatattatcatctacagggttagttatagaactgtctggttttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120103 lncRNA downstream 1161 18597480 ~ 18597690 (-) True G101418
TU120094 lncRNA downstream 39237 18559319 ~ 18559614 (-) True G101409
TU120093 lncRNA downstream 43658 18554876 ~ 18555193 (-) True G101408
TU120091 lncRNA downstream 46648 18551917 ~ 18552203 (-) True G101406
TU120090 lncRNA downstream 47126 18551441 ~ 18551725 (-) True G101405
TU120166 lncRNA upstream 51075 18650442 ~ 18652261 (-) True G101478
TU120171 lncRNA upstream 74097 18673464 ~ 18676017 (-) True G101483
TU120157 lncRNA upstream 79364 18678731 ~ 18681725 (-) True G101469
TU120153 lncRNA upstream 108551 18707918 ~ 18732829 (-) True G101467
TU120154 lncRNA upstream 131133 18730500 ~ 18732829 (-) False G101467
XM_026932720.2 mRNA downstream 74625 18282619 ~ 18524226 (-) False rasgrf1
XM_034305502.1 mRNA downstream 74625 18282619 ~ 18524226 (-) True rasgrf1
XM_034305503.1 mRNA downstream 89302 18282619 ~ 18509549 (-) False rasgrf1
XM_034305505.1 mRNA downstream 89451 18282619 ~ 18509400 (-) False rasgrf1
XM_034305504.1 mRNA downstream 112022 18282619 ~ 18486829 (-) False rasgrf1
XM_034305474.1 mRNA upstream 135060 18734427 ~ 18741724 (-) False znf710a
XM_026932413.2 mRNA upstream 135060 18734427 ~ 18741724 (-) False znf710a
XM_034305473.1 mRNA upstream 135060 18734427 ~ 18741724 (-) False znf710a
XM_026932412.2 mRNA upstream 135060 18734427 ~ 18741724 (-) True znf710a
XM_026913714.2 mRNA upstream 710521 19309888 ~ 19333430 (-) True dhx34
TU119855 other downstream 402045 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 511880 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 3244214 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 4251843 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 4810004 13788751 ~ 13788847 (-) True LOC113534839
XR_003402833.1 other upstream 751395 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 1380702 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 2354235 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 2395974 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 3635336 22234703 ~ 22306769 (-) False si

Expression Profile