RNA id: TU120153


Basic Information

Item Value
RNA id TU120153
length 2408
lncRNA type inter_gene
GC content 0.42
exon number 8
gene id G101467
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18707918 ~ 18732829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGACAAAACGAATTTATTAGAAGGTTTCCAAAATGGCCATTCACCTTTGTTTCCAGGTTTAATACAGTATTACATACAGTACttcatatttaaaaactaaaacctTGCGGGTATAAGGACAGTTTGGAATTGGAGTGGACTGATGACACTTACAGTTTAGCTAACACTAGCCAACAGCActgctgcagaaaaaaaacataggtTTCTTTTCAACTTTTCCCTTCAGCAATAATGGTTATGGTTACAATGACATTTAAGTTAAATGAGGTACAAAAAGGAAAAGATGTGCTTCAGTGTCCTCCTCCTTCATTTACCCAGAGCTTTGTCCAGGTTGGTCTTGATTGCATCTAGGAAGTCCGTGGTGTTGACATAGTGCTCATTAAGCTTGACATTTGAGAGCCCATGAATGCAGCCTGCCAGATCCTTGGTCATGACACCATTCTCCACAGTGTCCACACACACTCGTTCCAGAGTCTGAGAAACTTGATCAAATCTGGGTTTCCATCAAGCTTGCCTCTGTGCTCCAGTCCCCTGGTCCAGGCAAAGATGCTCGCAATAGGATTGGTGCTGGTTGGTCTTCCCTTCTGATGCTCACGGTAATGCCTAGTTACTGTGCCATGGGCAGCTTCAGCCTCAATGGTCTTTCCATCAGGGCACACAAGAACAGAGGTCATCAAGCCCAAGGAGCCAACCTTGAGCCAAAATATCAGACTGGACATCTCCATCATAGTTCTTGCAAGCCCAAACAAAAGCACCAGAGGACTTCAACACTTGTGCCACCATGTCATCAATAAGCCTGTGCTCATACCAGATCTTCAGCTTGTCAAACTCAGGCTTGTATTTTCTCGAAGATGTCCTGGAAGATGTCCTTGAAGCGCCCATCATACGCTTTCAAGATGGTATTCTTGGTGCTCATGTATAGAGGCCATTTTTTCTGGATAGCATACTGGAAGCAGCTGTGAGCAAACCCAGTGATGGACTCATCAGTATTGTACATGCCCATTCCACAGCCACCCCCTGGGAAATCGAACACTTCCCACTCCTGGCCTTTGCTTCCATCAGCTGGAATAAAGCTGATCATAAATTTGCCTGGTGTATTCACAACAAAGTCTGTGGCTCTGTACTGTAAACAGGacatataattacataattacatacaaGGTTAAAGAAAGACATCTGTTGTAATTTACTGTCAAAAAAAAGCATGTCCAAGAATAGAACACCTGGTCACCAAAGGCATGTCTGCCAATTGTGATGGGCTGTGTCCAACCAGGAACAAGTCTGGGAATGTTCTTGCAGATGATGGGTTCACGAAAAACTGTGCCACCCAAGATGTTTCTGATGGTTCCATTGggacttttccacattttcttcAACTTGAATTCCTTCGACCCTGGCCTCGTCGGGAGTGATGGTCGCACACTTGACAGCAACATTGTACTTCTTAGTTGCTAAGGCAGAGTCAATGGTGACCTGGTCATCAGTCTGGTCACGGTAGGGGAGGCCCAGGTCAAAGTACTTCAGCTCCATATCAACATTGGACAGGATGAGCTGAGGAGACCAGATGTATGTGAGCAGgagacacaaaaacaacatacaTGCATATGCAAAGTGGCCAAATGTTGTCAACCCTATACATCTATTTGAATTAATTACATCAACCATTGCAAGTAAGCATAAGCAATGCCAATACAATTGTGCTATGTTTATCTCAACATTTGACCTTAATATAGTGCAAACATAAAttctatttaaaagtttaaaccaaaacGAAGGAAAAAATACAGCCTCCTTGACCTGATAAATGCCTCCTACAGCCTGCGCTACTCCCAAACACTGTGTgcttagatttaaaaaacaccAAGATAAACAGACAGCACTTCGCTGAGGACTGAGCTCATAGCAAAAATCTCAATTATCACTTCAGAGATATGGAATTGGCACAGGTTTGAAGAATCAGATGAacaagtttatgtaaaatataatgctgcattacatCTAAGCGGTAACTCACCAGtggaattacatcattttcagcCTCGGCACGTTCGACAGACGAAGTGGAAAAATTGACGCTCCCATGTTcgtattttgttagcaacaagctgtGCAGCTAACTCAGATGATCGATGTATATCTTCTTTCTCAAACAGCGAACTGTATAGTcaaatctaaagctaatacttgtatatacagtataactcattttaaGGTATgaagttttgctttgtttatttctgatattGTGCACaaccatgttgatttgacgttaCTCCGTAATTGGAGAAAGAACTCGGATTTGAGAAGAATACCCCAAGTTGACATTTCACGCCACAAAAGGCATAGTCCCCATTTACTCTGTTGAGGAAGAAGGGTTTAAAGTGCCATCtttagcaaatagtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120157 lncRNA downstream 26193 18678731 ~ 18681725 (-) True G101469
TU120171 lncRNA downstream 31901 18673464 ~ 18676017 (-) True G101483
TU120166 lncRNA downstream 55657 18650442 ~ 18652261 (-) True G101478
TU120105 lncRNA downstream 108551 18598851 ~ 18599367 (-) True G101420
TU120103 lncRNA downstream 110228 18597480 ~ 18597690 (-) True G101418
TU120176 lncRNA upstream 13316 18746145 ~ 18746365 (-) True G101488
TU120195 lncRNA upstream 30521 18763350 ~ 18763597 (-) True G101507
TU120196 lncRNA upstream 31132 18763961 ~ 18764168 (-) True G101508
TU120197 lncRNA upstream 32367 18765196 ~ 18765422 (-) True G101509
TU120209 lncRNA upstream 60790 18793619 ~ 18794802 (-) True G101521
XM_026932720.2 mRNA downstream 183692 18282619 ~ 18524226 (-) False rasgrf1
XM_034305502.1 mRNA downstream 183692 18282619 ~ 18524226 (-) True rasgrf1
XM_034305503.1 mRNA downstream 198369 18282619 ~ 18509549 (-) False rasgrf1
XM_034305505.1 mRNA downstream 198518 18282619 ~ 18509400 (-) False rasgrf1
XM_034305504.1 mRNA downstream 221089 18282619 ~ 18486829 (-) False rasgrf1
XM_034305474.1 mRNA upstream 1598 18734427 ~ 18741724 (-) False znf710a
XM_026932413.2 mRNA upstream 1598 18734427 ~ 18741724 (-) False znf710a
XM_034305473.1 mRNA upstream 1598 18734427 ~ 18741724 (-) False znf710a
XM_026932412.2 mRNA upstream 1598 18734427 ~ 18741724 (-) True znf710a
XM_026913714.2 mRNA upstream 577059 19309888 ~ 19333430 (-) True dhx34
TU119855 other downstream 511112 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 620947 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 3353281 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 4360910 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 4919071 13788751 ~ 13788847 (-) True LOC113534839
XR_003402833.1 other upstream 617933 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 1247240 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 2220773 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 2262512 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 3501874 22234703 ~ 22306769 (-) False si

Expression Profile